Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16580 373 / 2e-126 Protein phosphatase 2C family protein (.1) AT5G66720 367 / 8e-125 Protein phosphatase 2C family protein (.1.2) AT4G33500 135 / 3e-34 Protein phosphatase 2C family protein (.1) AT2G30170 117 / 9e-30 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028900 [exp] 585 / 0 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.014G042800 [exp] 400 / 5e-136 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 150 / 3e-42 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 144 / 3e-40 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 143 / 2e-38 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 125 / 2e-33 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 119 / 1e-31 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 107 / 4e-26 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010797 [exp] 372 / 7e-127 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 376 / 2e-126 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 358 / 5e-121 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10014413 [exp] 355 / 2e-120 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 120 / 1e-31 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10031355 [exp] 109 / 1e-26 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 102 / 4e-24 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF07228 [poplar] [flax] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Potri.005G125700.1 pacid=42802641 polypeptide=Potri.005G125700.1.p locus=Potri.005G125700 ID=Potri.005G125700.1.v4.1 annot-version=v4.1 ATGCCATCTGGGGTTCTTTTGAAACTGAATTTTGGATTAAGGAGAGCTATTGTTGGTAGAAATTCGATTCCTTTGGTGTCGAAGACTAGTCAATTTTCAT CAAGGAGGTCTCTTGTTAGGAGTTCAATGGCTGCTTCCAGTTCTAAAGCTGTCTTTGGTGATGTTCATATTGATGACATGATTGCCACTTGTGGGAATGG ATTGGAGTTTTCAAAACCCAGTGCTGTTTTTTTCTCTGATAGAAGTCGTTCTAGTTGTCTAAAATCGAGTGTTAAAATGAGAAATAGGGAGTTGCCAAAT AGTCGTTTGGTGTGTGGAAACTTTATGCTTGATGCAATGAGAGGGAACGGTAAGGCAAATAATTTAGTTGTTGGAACATTGTTGAAGAACTTGTATTCTT CGTCTTCTGTGTGTTTCTCTGCTGGGGCTGCTCAAGATGTGTCATTTGATGGGAATTCTCGCAAGGAACAGGTGGTGGACTCCACTGTGGTATCTGGCCA GAATACTGTTGATGACAGAAACTTGAAGCTGCTCTCTGGATCATGTTACTTGCCACATCCTGATAAGGAGGAGACTGGTGGGGAAGATGCTCACTTCATA TGTGAAGATGAACAAGCTATAGGTGTAGCAGATGGTGTAGGAGGCTGGGCAGATGTAGGAGTCAATGCAGGGGAATTTTCTCGTGAACTTATGTCTCATT CAGTTAGTGCAATTCAAGAGGAACCCAATGGTTCCTTTGACCCAGCCAGGGTGTTGGAGAAGGCTCACGCAAAAACAAAAGCTCAGGGTTCTTCAACGGC CTGCATCATTACCCTTAATAGTGAGGGAATACGTGCTATTAATCTGGGAGACAGTGGATTCATGGTGGTTAGAGATGGATGTACTATCTTCCGATCCCCA GTGCAGCAGCATGGCTTCAATTTTACATATCAACTGGAAAGTGGCAATGGAGGTGATCTACCCAGCTCTGGGCAGGTTTTTACAGTTCCTGTCGCTCCTG GTGATGTCATTATAGCTGGGACAGATGGATTATTTGACAACTTATATAACAATGAGGTTGCTGCTGTTGTGGTGCATGCTATAAGAACTGGCTTAGGGCC TGAAGCAGCTGCTCAGAAGATTGCAGCTTTGGCACGTCAGCGAGCAGTGGATAGGAACCAGCAGACACCGTTTTCCACTGCAGCTCAAGATGCTGGGTAT CGATACTATGGTGGCAAACTCGATGACATCACTGTCGTTGTGTCATATATAACAAACTCTGCCAATATGTGA
AA sequence Show only first row Show all	>Potri.005G125700.1 pacid=42802641 polypeptide=Potri.005G125700.1.p locus=Potri.005G125700 ID=Potri.005G125700.1.v4.1 annot-version=v4.1 MPSGVLLKLNFGLRRAIVGRNSIPLVSKTSQFSSRRSLVRSSMAASSSKAVFGDVHIDDMIATCGNGLEFSKPSAVFFSDRSRSSCLKSSVKMRNRELPN SRLVCGNFMLDAMRGNGKANNLVVGTLLKNLYSSSSVCFSAGAAQDVSFDGNSRKEQVVDSTVVSGQNTVDDRNLKLLSGSCYLPHPDKEETGGEDAHFI CEDEQAIGVADGVGGWADVGVNAGEFSRELMSHSVSAIQEEPNGSFDPARVLEKAHAKTKAQGSSTACIITLNSEGIRAINLGDSGFMVVRDGCTIFRSP VQQHGFNFTYQLESGNGGDLPSSGQVFTVPVAPGDVIIAGTDGLFDNLYNNEVAAVVVHAIRTGLGPEAAAQKIAALARQRAVDRNQQTPFSTAAQDAGY RYYGGKLDDITVVVSYITNSANM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	0	1
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	3.00	0.9280
AT5G59610			Chaperone DnaJ-domain superfam...		Potri.001G072700 [exp]	3.16	0.9419
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G057800 [exp]	4.58	0.9341
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	6.32	0.9294
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	6.92	0.9400
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031800 [exp]	11.40	0.9266
AT1G52190			Major facilitator superfamily ...		Potri.018G040301 [exp]	13.26	0.9219
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	17.49	0.9309	Pt-MST2.1
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.003G056600 [exp]	18.97	0.9214
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	21.23	0.9135

Compare expression of checked genes

Potri.005G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.