Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36730 322 / 3e-109 bZIP GBF1 G-box binding factor 1 (.1.2) AT2G35530 176 / 3e-51 bZIP AtbZIP16 basic region/leucine zipper transcription factor 16 (.1) AT1G32150 159 / 3e-45 bZIP AtbZIP68 basic region/leucine zipper transcription factor 68 (.1) AT2G46270 97 / 2e-22 bZIP GBF3 G-box binding factor 3 (.1.2) AT4G01120 91 / 2e-20 bZIP ATBZIP54, GBF2 BASIC REGION/LEUCINE ZIPPER MOTIF 5, G-box binding factor 2 (.1) AT2G18160 60 / 1e-10 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G30530 59 / 3e-10 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G60830 57 / 3e-09 bZIP ATBZIP70 basic leucine-zipper 70 (.1) AT5G38800 56 / 3e-09 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT1G75390 56 / 5e-09 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029400 [exp] 535 / 0 AT4G36730 302 / 1e-101 G-box binding factor 1 (.1.2) Potri.003G097600 [exp] 168 / 1e-48 AT2G35530 447 / 1e-156 basic region/leucine zipper transcription factor 16 (.1) Potri.001G136000 [exp] 155 / 9e-44 AT2G35530 424 / 3e-147 basic region/leucine zipper transcription factor 16 (.1) Potri.014G094200 [exp] 143 / 9e-39 AT2G46270 340 / 2e-114 G-box binding factor 3 (.1.2) Potri.002G167100 [exp] 95 / 2e-21 AT2G46270 355 / 1e-120 G-box binding factor 3 (.1.2) Potri.004G111100 [exp] 57 / 1e-09 AT3G30530 156 / 9e-49 basic leucine-zipper 42 (.1) Potri.008G113400 [exp] 57 / 2e-09 AT1G13600 139 / 2e-41 basic leucine-zipper 58 (.1) Potri.010G135200 [exp] 57 / 4e-09 AT3G30530 131 / 2e-38 basic leucine-zipper 42 (.1) Potri.007G006900 [exp] 57 / 4e-09 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014324 [exp] 350 / 6e-120 AT4G36730 291 / 2e-97 G-box binding factor 1 (.1.2) Lus10026033 [exp] 332 / 2e-112 AT4G36730 273 / 4e-90 G-box binding factor 1 (.1.2) Lus10024030 [exp] 322 / 6e-109 AT4G36730 267 / 3e-88 G-box binding factor 1 (.1.2) Lus10041720 [exp] 317 / 5e-107 AT4G36730 271 / 1e-89 G-box binding factor 1 (.1.2) Lus10003034 [exp] 90 / 2e-19 AT2G46270 333 / 3e-111 G-box binding factor 3 (.1.2) Lus10005146 [exp] 88 / 5e-19 AT2G46270 340 / 1e-113 G-box binding factor 3 (.1.2) Lus10029101 [exp] 63 / 3e-11 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1) Lus10013059 [exp] 61 / 1e-10 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 53 / 5e-08 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10001347 [exp] 51 / 2e-07 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF07777 [poplar] [flax] MFMR G-box binding protein MFMR
Representative CDS sequence Show only first row Show all	>Potri.005G126000.7 pacid=42804866 polypeptide=Potri.005G126000.7.p locus=Potri.005G126000 ID=Potri.005G126000.7.v4.1 annot-version=v4.1 ATGGGGACAAGGGAAGAAAGCACACCTGCTAAGCCTTCCAAACCAGCATCTTCAAATCAGGAAATACCCGCAACGCCTTCATATCCTGATTGGTCAAATT CTGTGCAGGCTTATTATGGTGCTGGAGCTACCCCACCTCCCTTTTTTGCCTCAACAGTTGCCTCACCGACGCCTCATCCCTATATTTGGGGAAGCCAGCA TCCTTTAATCCCACCTTATGGAACCCCGGTTCCATACCCAGCTTTATATCCTGCAGGGGGAGTGTATGCCCATCCAAACATGGCCCCGACACCAAATTCA GCACCGGCAAATACAGAGTTGGAAGGAAAGGTCCCTGACGGAAAGGACCATGCTTCAGCTAAAAAAGCTAAGGGAACTTCAGGAGGAAAAGCTGGAGAGA GTGGAAAGGCTATTTCAGATTCAGGAAATGATGGTGCCTCCCAAAGTGCTGAAAGTGGTACAGATGGCTCATCTGATTCCAGTGATGAGAATACTAACCA GCAGGAAAATGCTGCAAACAAGAAAGGAAGCTTCAACCAGATGCTTGCAGATGCCAATGCACAAAGTAACTCAGCCGGAGCAAATATCCAGACTTCTGTG CCTGGGAAGCCTGTGGTGTCTATGCCTGCAACTAATCTAAACATTGGGATGGACTTGTGGAATGCATCTCCAGATGCTTCTGGAACTACAAAAATGAGAC CAAATCCATCCGGTGCCTCATCCGGTATTGTTCCTGCTGGAATGCCTGAACAATGGATTCAAGATGAACGTGAATTGAAAAGACAGAAGAGGAAACAATC TAATAGAGAGTCAGCCAGAAGGTCAAGGTTACGTAAACAGGCAGAGTGTGAAGAGTTACAAGTCAGGGTAGAGAATTTGAGCAATGACAATTGCAATCTT AGAGATGAATTGCAGAGCCTCTCCGAAGAATGCAACAAGCTTAAATCCGAAAACGATTTCATTAAGGAGGAGTTGACTCGGTTGTATGGACCGGAAGCAG TAGCTAACCTTGAACAAACCAACCCCGTTTCAGATCCAAAGTCTCACGGTGGTGAGGGAGACAGTTAA
AA sequence Show only first row Show all	>Potri.005G126000.7 pacid=42804866 polypeptide=Potri.005G126000.7.p locus=Potri.005G126000 ID=Potri.005G126000.7.v4.1 annot-version=v4.1 MGTREESTPAKPSKPASSNQEIPATPSYPDWSNSVQAYYGAGATPPPFFASTVASPTPHPYIWGSQHPLIPPYGTPVPYPALYPAGGVYAHPNMAPTPNS APANTELEGKVPDGKDHASAKKAKGTSGGKAGESGKAISDSGNDGASQSAESGTDGSSDSSDENTNQQENAANKKGSFNQMLADANAQSNSAGANIQTSV PGKPVVSMPATNLNIGMDLWNASPDASGTTKMRPNPSGASSGIVPAGMPEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQVRVENLSNDNCNL RDELQSLSEECNKLKSENDFIKEELTRLYGPEAVANLEQTNPVSDPKSHGGEGDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	0	1
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	2.00	0.9109
AT2G15890		MEE14	maternal effect embryo arrest ...		Potri.009G108200 [exp]	4.00	0.8896
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	4.24	0.8943
AT1G80150			Tetratricopeptide repeat (TPR)...		Potri.001G171300 [exp]	9.74	0.8736
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	11.09	0.8349
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.012G105900 [exp]	14.69	0.8415	CLPC.1
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	16.09	0.8677
AT5G63190			MA3 domain-containing protein ...		Potri.012G091900 [exp]	16.37	0.8046
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	17.60	0.8242
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	18.97	0.8507

Compare expression of checked genes

Potri.005G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.