Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18550 201 / 1e-65 HD HB-2, ATHB21 homeobox-2, homeobox protein 21 (.1) AT4G36740 200 / 3e-65 HD HB-5, ATHB40 homeobox protein 40 (.1) AT5G66700 142 / 3e-42 HD ATHB53, HB53, HB-8 HOMEOBOX-8, ARABIDOPSIS THALIANA HOMEOBOX 53, homeobox 53 (.1) AT3G01470 83 / 4e-19 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 77 / 6e-17 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 77 / 7e-17 HD ATHB6 homeobox protein 6 (.1) AT5G65310 77 / 1e-16 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G69780 74 / 1e-15 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G03790 72 / 3e-15 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT5G15150 70 / 3e-14 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029500 [exp] 280 / 6e-97 AT4G36740 208 / 2e-68 homeobox protein 40 (.1) Potri.002G100600 [exp] 84 / 2e-19 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.015G065400 [exp] 84 / 2e-19 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 80 / 6e-18 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.007G097100 [exp] 79 / 2e-17 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 79 / 2e-17 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.006G117700 [exp] 78 / 2e-17 AT5G03790 181 / 5e-57 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Potri.008G194400 [exp] 75 / 4e-16 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.008G148200 [exp] 75 / 4e-16 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041719 [exp] 156 / 1e-47 AT4G36740 192 / 9e-62 homeobox protein 40 (.1) Lus10024031 [exp] 149 / 6e-45 AT4G36740 189 / 2e-60 homeobox protein 40 (.1) Lus10037218 [exp] 82 / 2e-18 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 82 / 2e-18 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 81 / 3e-18 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10035583 [exp] 79 / 9e-18 AT5G03790 146 / 2e-43 LATE MERISTEM IDENTITY1, homeobox 51 (.1) Lus10036674 [exp] 80 / 1e-17 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 79 / 1e-17 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 79 / 2e-17 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 78 / 3e-17 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.005G126100.1 pacid=42804851 polypeptide=Potri.005G126100.1.p locus=Potri.005G126100 ID=Potri.005G126100.1.v4.1 annot-version=v4.1 ATGAATCACAAGGTTGAAGATCACATAGCACTCATATCTCAATTGTACCCCGGTTTATACACTCAAATGGTTCCAAAACAAGGTGAATCTAAACCACGAC GAAGGCGAAAGAAGAACACAGGAGAAGGTGTTAGTGGCGCAAGGAAGAGGAAACTTAGTGCTGAGCAAGTTAATTTCCTAGAAATGAATTTTGGTGATGA ACATAAGTTGGAAACCGAGAGGAAGGACAAGCTTGCTTCAGATTTGGGACTTGATCCTCGTCAAGTTGCGGTTTGGTTTCAAAACCGAAGGGCAAGGTGG AAGAACAAGAAGCTAGAGGAGGAATACACAAAGTTGAAGACAGCCCATGAGAGCATAGTTGTCCAGAAATGCCAGCTTGAATCCGAGGTTTTAAAGCTCA AGGAACAACTCTCTAGAACAGAGAAGGAGATCCAAAGGCTATCAGACCGTGCTGATAGGGTTTCCACCAACAGTCCAAGTTCATCCCTGTCAATGGCCAT TGAGCCCCCATTTCTGGGAGAATTTGCAGTACTGGAAGGATATGGAGATGCTTTCTACATGCCACCAGAAAACAATTACATTCCCGGAATGGAATGGATT AGTCAGTATATGTGA
AA sequence Show only first row Show all	>Potri.005G126100.1 pacid=42804851 polypeptide=Potri.005G126100.1.p locus=Potri.005G126100 ID=Potri.005G126100.1.v4.1 annot-version=v4.1 MNHKVEDHIALISQLYPGLYTQMVPKQGESKPRRRRKKNTGEGVSGARKRKLSAEQVNFLEMNFGDEHKLETERKDKLASDLGLDPRQVAVWFQNRRARW KNKKLEEEYTKLKTAHESIVVQKCQLESEVLKLKEQLSRTEKEIQRLSDRADRVSTNSPSSSLSMAIEPPFLGEFAVLEGYGDAFYMPPENNYIPGMEWI SQYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18550	HD	HB-2, ATHB21	homeobox-2, homeobox protein 2...		Potri.005G126100 [exp]	0	1
AT3G60530	GATA	GATA4	GATA transcription factor 4 (....		Potri.014G058600 [exp]	1.00	0.9614
					Potri.018G122600 [exp]	4.24	0.9467
					Potri.019G014368 [exp]	5.29	0.9279
					Potri.002G101101 [exp]	6.00	0.9288
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.001G023400 [exp]	6.24	0.9188
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.001G088700 [exp]	6.48	0.9155
AT5G54370			Late embryogenesis abundant (L...		Potri.012G145400 [exp]	6.92	0.9370
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.013G007700 [exp]	16.12	0.8381
AT3G12830			SAUR-like auxin-responsive pro...		Potri.003G070900 [exp]	17.02	0.8998	SAUR14
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083000 [exp]	19.74	0.9206

Compare expression of checked genes

Potri.005G126100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.