Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18630 338 / 3e-114 Protein of unknown function (DUF677) (.1) AT5G66675 298 / 2e-98 Protein of unknown function (DUF677) (.1) AT4G34320 284 / 2e-93 Protein of unknown function (DUF677) (.1) AT5G66670 225 / 5e-70 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT4G34330 211 / 4e-65 Protein of unknown function (DUF677) (.1) AT5G66660 202 / 5e-61 Protein of unknown function (DUF677) (.1) AT3G28270 123 / 1e-31 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28290 118 / 7e-30 AT14A Protein of unknown function (DUF677) (.1) AT3G28300 118 / 7e-30 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 84 / 7e-18 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127300 [exp] 692 / 0 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 671 / 0 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 472 / 3e-167 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 328 / 2e-110 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 328 / 2e-110 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 317 / 3e-106 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040334 [exp] 353 / 2e-120 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 340 / 7e-115 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1) Lus10011295 [exp] 275 / 2e-89 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040489 [exp] 260 / 7e-84 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.005G127200.1 pacid=42804136 polypeptide=Potri.005G127200.1.p locus=Potri.005G127200 ID=Potri.005G127200.1.v4.1 annot-version=v4.1 ATGACGAGAGGTAATCAATCTTGCAAGACTAGAGGTGGTGATATCCCACCACCACCTGTTCAAAGCATAACCCATTCCCAATTCGCGGAAGATTTTAGCT CCTATGAGGATGCTTGTAAGCTAGATCCATGCTTGCAATCCTTTGATGCCACCCTCATGGAGAAGACTAACCATGTCATAAACTCACTTAGCACTGGTGA TATAGCCACGGGATCCTCAGGCTCATTCAAAGCGGTCACTAATTGCCTTCTTGAAATGAACCAAGATGTGGTTAAATTCATACTAGAAAGCAAAGAAGAT ATCTGGAATAATCCAGAATTGTTTGTTTTGGTTGAGGAATACTTCGGGAGTAGCATCAAAACTATGGATTTCTGCACTGAACTAGAAAGTTGTGTTACAA GTGCTCGAACTAGCCAGTTGAATATAATGGCTGCCATTGCGCATTTTGAGAAGGAAGTGGAATTGCAAGATGGGGTGATTGAGAAGAAGTACGTCAAGAC ATTAGAAGAATTACAGAATTTTATGGTTGCAGGGGATCCATTTACCCCCAAATTCTTTATGCTGTTTCAATCGGTTTATGAACAGCAGGTCTCCATGTTG AAGAAATTGCAATCTCATAAGAGGAAGCTTGATAAGAAATTGAAATCGGTGAAGATCTGGAGGAGAGTGTCGAATGTTTTATTTGTGTCCGTTTTTGTCA CCGTGATGATTTTTGCGGTTGCAGCAGCTGCCATTGCTGCACCACCTGTTGTAACTGCTTTGGCCAGTGCTCTGGCTGACCCAATGCGCTCGGTGGGAAC GTGGTGTAACTTGCTTTGGCATCGGTATGAGAACGCGTTGAAGGAGCAGAAGGTGTTGGTGAACGCAATTCAGGTTGGAACTTTCATTACAATCAAGGAC ATGGAGAGTATACGGGTGCTTGTCAACAAATTGGAAATGGAAATCAAGTCCCTCTTGCACCATGCTGACTTTGCTATCAGAGAAGTAGATGTTGTGAAAC TTGTGATAGATGAGATCAAGAAGAAGATGGCAGTGTTCACGGAAACTTTTGAGGATTTAGCTGCCCAAGCTCATAGGTGTAACCATGACATAATCCTGGG AAGGACTATGATTTCAAAGAGGATAATCGAATTTGCAGGCAAGTGA
AA sequence Show only first row Show all	>Potri.005G127200.1 pacid=42804136 polypeptide=Potri.005G127200.1.p locus=Potri.005G127200 ID=Potri.005G127200.1.v4.1 annot-version=v4.1 MTRGNQSCKTRGGDIPPPPVQSITHSQFAEDFSSYEDACKLDPCLQSFDATLMEKTNHVINSLSTGDIATGSSGSFKAVTNCLLEMNQDVVKFILESKED IWNNPELFVLVEEYFGSSIKTMDFCTELESCVTSARTSQLNIMAAIAHFEKEVELQDGVIEKKYVKTLEELQNFMVAGDPFTPKFFMLFQSVYEQQVSML KKLQSHKRKLDKKLKSVKIWRRVSNVLFVSVFVTVMIFAVAAAAIAAPPVVTALASALADPMRSVGTWCNLLWHRYENALKEQKVLVNAIQVGTFITIKD MESIRVLVNKLEMEIKSLLHHADFAIREVDVVKLVIDEIKKKMAVFTETFEDLAAQAHRCNHDIILGRTMISKRIIEFAGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18630			Protein of unknown function (D...		Potri.005G127200 [exp]	0	1
AT3G05920			Heavy metal transport/detoxifi...		Potri.002G032800 [exp]	3.60	0.6762
AT3G53400			unknown protein		Potri.016G088900 [exp]	15.65	0.5965
AT5G19473			RPM1-interacting protein 4 (RI...		Potri.009G067600 [exp]	21.26	0.6166
AT5G39250			F-box family protein (.1)		Potri.017G092800 [exp]	27.56	0.6137
					Potri.019G128725 [exp]	28.87	0.6388
AT4G06676			unknown protein		Potri.004G222300 [exp]	61.61	0.5866
AT1G78780			pathogenesis-related family pr...		Potri.011G108900 [exp]	64.35	0.5791
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.015G007000 [exp]	68.75	0.5685
AT1G22540			Major facilitator superfamily ...		Potri.013G106925 [exp]	81.28	0.5458
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.008G020400 [exp]	86.87	0.5372

Compare expression of checked genes

Potri.005G127200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.