Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18630 342 / 2e-115 Protein of unknown function (DUF677) (.1) AT5G66675 304 / 2e-100 Protein of unknown function (DUF677) (.1) AT4G34320 283 / 7e-93 Protein of unknown function (DUF677) (.1) AT5G66670 231 / 3e-72 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT4G34330 214 / 3e-66 Protein of unknown function (DUF677) (.1) AT5G66660 208 / 1e-63 Protein of unknown function (DUF677) (.1) AT3G28270 122 / 4e-31 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28290 120 / 2e-30 AT14A Protein of unknown function (DUF677) (.1) AT3G28300 120 / 2e-30 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 83 / 2e-17 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127200 [exp] 692 / 0 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 682 / 0 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 473 / 3e-167 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 329 / 6e-111 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 329 / 6e-111 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 318 / 1e-106 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040334 [exp] 353 / 5e-120 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 341 / 2e-115 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1) Lus10011295 [exp] 271 / 4e-88 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040489 [exp] 256 / 3e-82 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.005G127300.1 pacid=42804238 polypeptide=Potri.005G127300.1.p locus=Potri.005G127300 ID=Potri.005G127300.1.v4.1 annot-version=v4.1 ATGACGGGAGGTGATCAATCTTGCAAGACTAGAGGTGGTAATATCCCACCACCACCTGTTGAAAGCAGCACTCATTCCCAATTCGCGGAAGATTTTAGCT CCTACGAGGATGCTTGTAAGCTAGATCCATGCTTGCAATCCTTTGATGCCACCCTCATGGAGAAGACTAACCATGTCATAAACTCACTTAGCACTGGTGA TATTGCCACGGGATCCTCAGGCTCATTCAAAGCGGTCACTAATTGCCTTCTTGAAATGAACCAAGATGTGGTTAAATTCATACTAGAAAGCAAAGAAGAT ATCTGGAATAATCCAGAATTGTTTGCTTTGGTTGATGAATACTTCGGGAGTAGCATCAAAACTATGGATTTCTGCACTGAACTAGAAAGTTGTGTCACAA GTGCTCGAACTAGCCAGTTGAATATAATGGCTGCCATTGCGCATTTTGAGAAGGAAGTGGAATTGCAAGATGGGGTGATTGAGAAGAAGTACGTCAAGAC ATTAGAAGAATTACAGAAATTTATGGTTGCAGGGGATCCATTTACCCCCAAATTCTTTATGCTGTTTCAATCGGTTTATGAACAGCAGGTCTCCATGTTG AAGAAATTGCAATCTCATAAGAGGAAGCTTGATAAGAAATTGAAATCGGTGAAGATCTGGAGGAGAGTGTCGAATGTTTTATTTGTGTCCGTTTTTGTCA CCGTGATGATTTTTGCGGTTGCAGCAGCTGCCATTGCTGCACCACCTGTTGTAACTGCTTTGGCCAGTGCTCTGGCTGACCCAATGCGCTCGGTGGGAAC GTGGTGTAACTTGCTTTGGCATCGGTATGAGAACGCGTTGAAGGAGCAGAAGGTGTTGGTGAACGCAATTCAGGTTGGAACTTTCATTACAATCAAGGAC ATGGAGAGTATACGGGTTCTTGTCAACAAATTGGAAATGGAAATCAAGTCCCTCTTGCACCATGCTGACTTTGCTATCAGAGAAGTAGATGTTGTGAAAC TTGTGATAGATGAGATCAAGAAGAAGATGGCAGTGTTCACGGAAACTTTTGAGGATTTAGCTGCCCAAGCTCATAGGTGTAACCATGACATAATCCTAGG AAGGACTATGATTTCAAAGAGGATAATCGAATTTGCAGGCAAGTGA
AA sequence Show only first row Show all	>Potri.005G127300.1 pacid=42804238 polypeptide=Potri.005G127300.1.p locus=Potri.005G127300 ID=Potri.005G127300.1.v4.1 annot-version=v4.1 MTGGDQSCKTRGGNIPPPPVESSTHSQFAEDFSSYEDACKLDPCLQSFDATLMEKTNHVINSLSTGDIATGSSGSFKAVTNCLLEMNQDVVKFILESKED IWNNPELFALVDEYFGSSIKTMDFCTELESCVTSARTSQLNIMAAIAHFEKEVELQDGVIEKKYVKTLEELQKFMVAGDPFTPKFFMLFQSVYEQQVSML KKLQSHKRKLDKKLKSVKIWRRVSNVLFVSVFVTVMIFAVAAAAIAAPPVVTALASALADPMRSVGTWCNLLWHRYENALKEQKVLVNAIQVGTFITIKD MESIRVLVNKLEMEIKSLLHHADFAIREVDVVKLVIDEIKKKMAVFTETFEDLAAQAHRCNHDIILGRTMISKRIIEFAGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18630			Protein of unknown function (D...		Potri.005G127300 [exp]	0	1
AT5G15500			Ankyrin repeat family protein ...		Potri.006G223700 [exp]	1.73	0.8555
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Potri.012G124500 [exp]	6.85	0.8783
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Potri.004G022900 [exp]	7.21	0.8438
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	10.95	0.8631	Pt-CYP94.6
AT1G15860			Domain of unknown function (DU...		Potri.001G047900 [exp]	14.96	0.7645
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.012G125900 [exp]	23.36	0.8292
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G056700 [exp]	29.39	0.7766
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	34.20	0.7878
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.010G220600 [exp]	35.00	0.8414
AT3G12290			Amino acid dehydrogenase famil...		Potri.011G098600 [exp]	39.49	0.7531

Compare expression of checked genes

Potri.005G127300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.