Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01390 635 / 0 EMB3111 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01360 147 / 2e-41 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 120 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 119 / 8e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT2G02150 115 / 9e-27 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G28010 114 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 113 / 6e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 112 / 1e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62910 108 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 108 / 2e-24 PGR3 proton gradient regulation 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 135 / 4e-33 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 127 / 1e-30 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G066400 [exp] 122 / 7e-29 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.013G034200 [exp] 119 / 3e-28 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 118 / 7e-28 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 118 / 1e-27 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 117 / 3e-27 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 115 / 5e-27 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G103400 [exp] 115 / 7e-27 AT1G03560 911 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028525 [exp] 669 / 0 AT2G01390 605 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 136 / 3e-33 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 124 / 2e-29 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011464 [exp] 122 / 4e-29 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033110 [exp] 118 / 1e-27 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10027914 [exp] 117 / 2e-27 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 116 / 8e-27 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001284 [exp] 114 / 2e-26 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10032648 [exp] 108 / 2e-26 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10009465 [exp] 112 / 1e-25 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G127500.2 pacid=42805383 polypeptide=Potri.005G127500.2.p locus=Potri.005G127500 ID=Potri.005G127500.2.v4.1 annot-version=v4.1 ATGTTGCCTTTCAAAACTCTCAGGACATTTCTCACAAAACATTTGTTGTCTCAATCTTACATAATTTTTCCTTCTCACTATTTCAATATTCCCATAAAAT GCCTTCACCAATCCAAACCCCAAAACCTCACCAGATTTTTCACCAGAAAACCAAGAAACCCAAAACCCAAATCACCATCGTCAAATGTAATAGAACCCCA AAAAATTTACATGAGGGACATTATCTCAAACATATACAAAATCTTGAAATACTCAACGTGGGACTCGGCACAAGAAGAGCTAACAAAACTAAATATCAAA TGGGATTCTTTTACAGTCAATCAAATACTTAAAACCCATCCACCGATGGAAAAGGCTTGGCTTTTTTTTAACTGGGCTTCAAAGTTGAAACGGTTTAAGC ATGACCAGTTTACTTACACAACCATGCTTGATATTTTTGGAGAAGCTGGAAGGATTGAGTCGATGAAGTATGTATTCAAGAAAATGCAAGAAATGGGGTT AAAAATTGATGTTGTTACCTATACTTCAATCTTGAATTGGGTCTCAAAGTCTGGTGATGTTGACGGAGCAGTGAAAATTTGGAAAGAAATGAGAGAAAAT ATGTGTTTTCCTACTGTTGTTTCGTATACGGCTTATCTAAAGGTTTTGTTCGATAATAAGAGAGTGAAAGAGGGTATTGATGTTTATAAGGAGATGCTTG AATCTGGGATTTCTCCAAATTGTCATACATATACTGTTCTAATGGAGCATCTTGTTGTTACTGGCAAATACCAAGAAACCCTTGAGATTTTTAGCAAAAT GCAAGAAGCAGGGGTACAACCTGATAAAGCTGCATGCAATATTTTGGTTGAGAGATGTTGCAAAGCAGGGGAGACAACGACAATGACCCACATTCTTCAA TATATGAAACAAAATCATCTCGTTCTTCGTTACCCTGTATTTATGGAAGCACTCGAAACTCTAAAAGATGCTGGTGAGAGTGATGCTCTCCTCAGGAAAG TTAATCCTCATATTGATACTGAATCAATTGGTGATGTGGATGCCTTTGAGACTATGACAACTGTTGGTGATGATGCTTTAGATGGAGGTCTTGTACTGAT ACTCTTGAGAAAGCAGAATCTCGTAGCAGTTGACCATTTGCTTGCTGGTATAATGGATAAGAATATACTACTGGATTCTCGGATTGTTGCAACCATCATT GAAAGAAACATTGATCACCAAAGACCTGATGGTGCTTTGTTGGCCTTTGAATACAGCATGAAAATGGGTATACAACTTGAAAGAACATCATATCTTGCTT TGATAGGCATGTCGATAAGATCAGACACATTTCTGAAGGTGGTGGACATTGCTGAAAAAATGACCGTGGCTGGGCATTCTCTTGGAGTGTATCAAGCTGC ACTCTTAATTTATAGGCTTGGGTGCGCTAAAAGGCCTACTTGTGCTGTAAAGATTTTTGATTTATTGCCTGAAGGCCAGAAGTGCACTGCCACTTATACT GCTCTAGTTAGCGTATTTTTCTCTGCTGGTAGTCCACAAAAAGCACTTCAGATTTACGAAAACATGAAAAGGGAAGGGATACATCCTTCTTTAGGTACTT ACAATGTTCTATTAGCTGGTCTAGAAAGTAGCGGCAGAATCAGTGAAGCAAAAACATATAGGAAGGAAAAAAAGGGACTGCTGATTAATAATCATCATCA GAATAGTGTCCCCATGGGGCAAAAGATTTGTAACCTTCTGTTTGCCAGCCATTTGGTATCTTGA
AA sequence Show only first row Show all	>Potri.005G127500.2 pacid=42805383 polypeptide=Potri.005G127500.2.p locus=Potri.005G127500 ID=Potri.005G127500.2.v4.1 annot-version=v4.1 MLPFKTLRTFLTKHLLSQSYIIFPSHYFNIPIKCLHQSKPQNLTRFFTRKPRNPKPKSPSSNVIEPQKIYMRDIISNIYKILKYSTWDSAQEELTKLNIK WDSFTVNQILKTHPPMEKAWLFFNWASKLKRFKHDQFTYTTMLDIFGEAGRIESMKYVFKKMQEMGLKIDVVTYTSILNWVSKSGDVDGAVKIWKEMREN MCFPTVVSYTAYLKVLFDNKRVKEGIDVYKEMLESGISPNCHTYTVLMEHLVVTGKYQETLEIFSKMQEAGVQPDKAACNILVERCCKAGETTTMTHILQ YMKQNHLVLRYPVFMEALETLKDAGESDALLRKVNPHIDTESIGDVDAFETMTTVGDDALDGGLVLILLRKQNLVAVDHLLAGIMDKNILLDSRIVATII ERNIDHQRPDGALLAFEYSMKMGIQLERTSYLALIGMSIRSDTFLKVVDIAEKMTVAGHSLGVYQAALLIYRLGCAKRPTCAVKIFDLLPEGQKCTATYT ALVSVFFSAGSPQKALQIYENMKREGIHPSLGTYNVLLAGLESSGRISEAKTYRKEKKGLLINNHHQNSVPMGQKICNLLFASHLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	0	1
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	1.00	0.9755
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	2.44	0.9569
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	2.82	0.9537	CRR2.1
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	3.16	0.9581
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	3.87	0.9509
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	4.69	0.9366
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	4.89	0.9489
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	4.89	0.9507
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	5.19	0.9478
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	6.48	0.9458

Compare expression of checked genes

Potri.005G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.