Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50760 462 / 2e-164 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 440 / 2e-155 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G62660 375 / 1e-129 GATL7 galacturonosyltransferase-like 7 (.1) AT4G02130 373 / 4e-129 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 372 / 5e-128 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 368 / 1e-126 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 365 / 7e-126 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G02720 365 / 2e-125 GATL5 galacturonosyltransferase 5 (.1.2) AT1G24170 365 / 3e-125 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G13250 351 / 2e-120 GATL3 galacturonosyltransferase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031700 [exp] 595 / 0 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G040300 [exp] 500 / 6e-179 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 487 / 8e-174 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G129400 [exp] 375 / 4e-130 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 374 / 2e-129 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 372 / 1e-128 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G038300 [exp] 367 / 2e-126 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 365 / 1e-125 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.008G192600 [exp] 365 / 2e-125 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016301 [exp] 486 / 2e-173 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 481 / 1e-171 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 480 / 5e-171 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041489 [exp] 388 / 7e-135 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 383 / 9e-133 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 381 / 7e-132 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10034012 [exp] 374 / 3e-129 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10029215 [exp] 374 / 6e-129 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10012765 [exp] 371 / 3e-128 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10002440 [exp] 370 / 7e-127 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.005G128000.1 pacid=42805197 polypeptide=Potri.005G128000.1.p locus=Potri.005G128000 ID=Potri.005G128000.1.v4.1 annot-version=v4.1 ATGTACAAACCAGGACGAAAATTAACACTACCATCACCGCCACATCTCCTCCTCTCCCTCCTTCTCCTCCTCTCCATAATTATAATCAATGCCACCGCCA CGGCTACCGTCAATACTAAAAGATTCAGAGAAGCCCCACAATTCTACAACTCCCCAACATGTCCATCAATCTCCACCAAAGACATGTGCTCTCAGCAAGC AGTGCACGTGGCTATGACTCTGGACTTCCCTTACCTCCGCGGCACCATGGCCGCTATTCTTTCCATCCTCCAACACTCCTCCTGCCCGGAAAATACTCGC TTCCACTTCATTTCCTCCCCTTCCTCCACCTACCTCCACGAAACTATCACCTCCTCCTTCCCTTACCTCCGTTCCCAAATCCACCCTTTCGACACCAACT CTGTCTCCGGCCTCATCTCCACCTCCATCCGCTCAGCCCTCGACTCTCCTCTTAACTATGCTCGCAATTATCTCGCCAACATCCTTCCTCCTTGCGTCCG GAAAGCTGTCTATTTAGACTCCGATTTAGTCCTAGTCGACGACATTGCAATGCTAGCAGCTACTCCACTTGGTACCGGAACTGTGTTAGCAGCACCGGAA TACTGTAATGCTAACATTACCGCATACTTTACTCCTACATTTTGGGCAAACCCTTCGCTCTCCTTGACATTTTCAGGACGCAATGCCTGTTACTTTAACA CAGGAGTGATGATTATTGATTTAGAAAGATGGAGAGAAGGAGATTACACAACAAAAATAGTTGAATGGATGGAGCTTCAAAAGAGGATGAGGATTTATGA ATTGGGCTCATTGCCTCCATTCTTGTTGGTTTTTGCTGGGAATATTGCTGCTGTGGATCATAAATGGAATCAACATGGCCTTGGAGGGGATAATTTTAGA GGTCTTTGTAGGGATTTGCATCCTGGTCCAGTTAGTCTTCTGCATTGGAGTGGCAAAGGGAAGCCTTGGGTTCGCTTAGATGAAAACCGGCCATGCCCTT TGGATGCATTATGGGCTCCTTATGATCTTATGCAGACACCTTTTGCTATTGACTTTTAG
AA sequence Show only first row Show all	>Potri.005G128000.1 pacid=42805197 polypeptide=Potri.005G128000.1.p locus=Potri.005G128000 ID=Potri.005G128000.1.v4.1 annot-version=v4.1 MYKPGRKLTLPSPPHLLLSLLLLLSIIIINATATATVNTKRFREAPQFYNSPTCPSISTKDMCSQQAVHVAMTLDFPYLRGTMAAILSILQHSSCPENTR FHFISSPSSTYLHETITSSFPYLRSQIHPFDTNSVSGLISTSIRSALDSPLNYARNYLANILPPCVRKAVYLDSDLVLVDDIAMLAATPLGTGTVLAAPE YCNANITAYFTPTFWANPSLSLTFSGRNACYFNTGVMIIDLERWREGDYTTKIVEWMELQKRMRIYELGSLPPFLLVFAGNIAAVDHKWNQHGLGGDNFR GLCRDLHPGPVSLLHWSGKGKPWVRLDENRPCPLDALWAPYDLMQTPFAIDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	0	1
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.010G242300 [exp]	1.00	0.8090
					Potri.007G022950 [exp]	2.64	0.7681
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.002G060700 [exp]	6.92	0.7554	CYP718.1
AT3G05390			unknown protein		Potri.004G232200 [exp]	6.92	0.7585
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	15.96	0.7502
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	29.32	0.7689
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.006G245000 [exp]	40.63	0.6860	Pt-ATKC1.4
AT5G66270	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G115901 [exp]	41.76	0.6604
					Potri.013G055800 [exp]	43.63	0.6490
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023700 [exp]	47.74	0.7650

Compare expression of checked genes

Potri.005G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.