Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 514 / 3e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 426 / 4e-141 Protein kinase superfamily protein (.1) AT3G21630 232 / 1e-67 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 211 / 2e-59 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G01840 208 / 2e-58 Protein kinase superfamily protein (.1) AT4G21230 186 / 8e-51 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT1G61860 176 / 4e-49 Protein kinase superfamily protein (.1) AT4G11530 182 / 5e-49 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT5G47070 176 / 8e-49 Protein kinase superfamily protein (.1) AT4G35600 175 / 2e-48 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032100 [exp] 987 / 0 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 478 / 3e-161 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128300 [exp] 469 / 2e-158 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 436 / 1e-145 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 320 / 5e-101 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 310 / 4e-97 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.009G010300 [exp] 278 / 1e-84 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 258 / 1e-76 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032300 [exp] 246 / 9e-73 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000577 [exp] 721 / 0 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 719 / 0 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 457 / 2e-153 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 300 / 2e-92 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10021889 [exp] 267 / 3e-81 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 259 / 8e-81 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 248 / 6e-73 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10041323 [exp] 246 / 2e-72 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016793 [exp] 244 / 8e-72 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10037389 [exp] 244 / 9e-72 AT2G33580 202 / 1e-56 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.005G128200.1 pacid=42804137 polypeptide=Potri.005G128200.1.p locus=Potri.005G128200 ID=Potri.005G128200.1.v4.1 annot-version=v4.1 ATGAGCTGCCTTTCTGTTGTTTCTTCTTTTGTTCTCTTTATTGTTTGTTGCAGTTCTTTGATTCAAGCTCAGCAACCATATGTAGGGAAAGCTACGACAA ATTGTTCCAACACGGAAAATTCTGCTCTTGGGTATTCTTGCAACGCCCTAAACAAGAGCTGCCAAGCTTATCTCATCTTCAGATCCCAGCCTCCTTACAA CACTGTTGCCTCCATATCTACCCTTTTGGGATCTGACCCATCTCAGCTCTCTGAAGTAAATTCAGTTTCTGAGACCACATCATTCCCATCAAACCAGTTG GTGATAGTTCCAGTAAACTGCTCATGTTCAGGCGAGTACTCTCAGGCAAACGCATCTTATATTGTTCAACCGAACGATACTCTTTTCTTGATTGCTAATA ACACCTATCAAGGCCTCTCAACCTGTCAAGCTCTCCAGAATCAAAAAACTACGCGAACTGACGATATACTTAGCGGTGAAACACTCACTGTTCCTCTTAG ATGTGCCTGTCCCACAAAGAACCAGAGTGATTTAGGTATAAGGTATCTCTTAAGTTACTTAGTCACACCGGGAGATGACGTTCCAGCTATTAGTGAACAA TTTGGCGCAGCTACTGGGAGAACTCTCGAGGCTAATGGACTCCCTGAGCAAAATCCCACCATTTTTCCCTTCACAACACTCCTAATTCCTTTACAAAGCA CGCCAACAAGTTCTCAAACTGTAGTGCCACCACCACCTCCAGCTTCATCTTCACCACCATCACCATCTCCAAACCCTGAAAAAAGCTCAAAGAAAACATG GCTTTATGTTGTGGTTGGGGTTGTTGGAGGAATTGCTCTTACAATAGTCATTGGAACCATTATTTTCTTCATGTTGTCCCGTAAAAGTAAGAAGCAACCC GGTCCAGTTATCGAATCGCAAAGCTTTGAGGCACATGAGAAACCACTCAACAAGAAGTTGGATGAAGAATCTCAGGAGTTTTTCGAGAGTATATCCGCTA TAGCTCAATCCATCAAAGTCTACAAGTTTGAAGATCTGAAAGCTGCAACTGATAACTTCAGTCCTAGCTGTTGGATCAAAGGGTCTGTTTATCGTGGCCT AATCAATGGTGACTTTGCTGCCATTAAGAAGATGAATGGAGACGTGTCTAAAGAGATAGAATTGTTGAATAAGATCAACCATTCTAATCTAATTCGCCTC TCCGGTGTTTGTTTCAATGATGGTCATTGGTACCTGGTTTACGAGTATGTTGCTAGTGGACAATTGAGTGATTGGATTTATGATAGAAGCAATGAAGGGA AGTTTTTAAATTGGACAAAAAGAATACAGATTGCTTCCGATGTCGCCACGGGACTTAATTATCTACATAGTTTCACTAACTATCCGCATGTCCACAAGGA TATAAAGAGCAGCAACATTCTTCTTGACAGTGATTTAAGGGCTAAAATTGCAAACTTTTCCCTGGCAAGGTCAACAGGTGACCAGGATGATGAATTTGTT TTGACAAGGCACATTGTTGGGACAAAAGGTTACATGGCTCCTGAGTACTTGGAAAATGGAGTTGTCTCCTCAAAGCTTGATGTCTATGCATTTGGGATTC TCACTCTGGAGATAATTACCGGGAAAGAAGTTGCTGCTTTACACAGTGAGGAAAGCAGGAACTTATCAGATGTTTTAAATGGTGCTCTATCTGAGGTAGA TGGGCAGGAGGAGAGTTTGAAGCAACTCATTGATCCTTCACTGCATGAGAACTATCCTTCAGGACTTGCTGTTTTAGTGGTCAGATTGATTGATAGTTGC TTAAACAAAAACCCAGGAGATCGCCCGACCATGGATGAAATCGTGCAGTCTCTCTCAAGAATTTTGACTACTTCGCTGGCCTGGGAATTGTCTAGCAATG TATCTGGCTACCATATCTCTAGTTAG
AA sequence Show only first row Show all	>Potri.005G128200.1 pacid=42804137 polypeptide=Potri.005G128200.1.p locus=Potri.005G128200 ID=Potri.005G128200.1.v4.1 annot-version=v4.1 MSCLSVVSSFVLFIVCCSSLIQAQQPYVGKATTNCSNTENSALGYSCNALNKSCQAYLIFRSQPPYNTVASISTLLGSDPSQLSEVNSVSETTSFPSNQL VIVPVNCSCSGEYSQANASYIVQPNDTLFLIANNTYQGLSTCQALQNQKTTRTDDILSGETLTVPLRCACPTKNQSDLGIRYLLSYLVTPGDDVPAISEQ FGAATGRTLEANGLPEQNPTIFPFTTLLIPLQSTPTSSQTVVPPPPPASSSPPSPSPNPEKSSKKTWLYVVVGVVGGIALTIVIGTIIFFMLSRKSKKQP GPVIESQSFEAHEKPLNKKLDEESQEFFESISAIAQSIKVYKFEDLKAATDNFSPSCWIKGSVYRGLINGDFAAIKKMNGDVSKEIELLNKINHSNLIRL SGVCFNDGHWYLVYEYVASGQLSDWIYDRSNEGKFLNWTKRIQIASDVATGLNYLHSFTNYPHVHKDIKSSNILLDSDLRAKIANFSLARSTGDQDDEFV LTRHIVGTKGYMAPEYLENGVVSSKLDVYAFGILTLEIITGKEVAALHSEESRNLSDVLNGALSEVDGQEESLKQLIDPSLHENYPSGLAVLVVRLIDSC LNKNPGDRPTMDEIVQSLSRILTTSLAWELSSNVSGYHISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	0	1
AT2G01900			DNAse I-like superfamily prote...		Potri.016G101966 [exp]	1.73	0.8660
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.014G015500 [exp]	5.09	0.8209
AT5G66430			S-adenosyl-L-methionine-depend...		Potri.014G168166 [exp]	8.94	0.8547
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G127700 [exp]	10.00	0.8687
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.010G115600 [exp]	13.03	0.7636
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	13.85	0.7558
AT5G51890			Peroxidase superfamily protein...		Potri.015G138300 [exp]	15.65	0.8547
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Potri.008G076500 [exp]	19.44	0.8425
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	22.73	0.7992
AT1G18720			Protein of unknown function (D...		Potri.008G088800 [exp]	23.62	0.7032

Compare expression of checked genes

Potri.005G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.