Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 392 / 6e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 202 / 2e-56 Protein kinase superfamily protein (.1) AT3G01840 173 / 3e-46 Protein kinase superfamily protein (.1) AT3G21630 166 / 7e-44 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 159 / 2e-41 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G29990 160 / 3e-41 Leucine-rich repeat transmembrane protein kinase protein (.1) AT4G04540 158 / 7e-41 CRK39 cysteine-rich RLK (RECEPTOR-like protein kinase) 39 (.1) AT2G19230 159 / 1e-40 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G26290 151 / 7e-40 ARSK1 root-specific kinase 1 (.1) AT4G02010 155 / 1e-39 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040000 [exp] 580 / 0 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 473 / 8e-160 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 457 / 4e-153 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 411 / 1e-135 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.008G160600 [exp] 283 / 6e-87 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 281 / 3e-86 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 266 / 2e-80 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 262 / 2e-78 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032300 [exp] 207 / 2e-58 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022488 [exp] 672 / 0 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 449 / 3e-150 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10032735 [exp] 434 / 5e-144 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 427 / 1e-141 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 414 / 7e-137 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 413 / 2e-136 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 360 / 3e-120 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008105 [exp] 293 / 4e-90 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10004504 [exp] 290 / 5e-89 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10021889 [exp] 237 / 4e-70 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G128300.1 pacid=42802921 polypeptide=Potri.005G128300.1.p locus=Potri.005G128300 ID=Potri.005G128300.1.v4.1 annot-version=v4.1 ATGAATCAGCTTCTTCTGAGTCTCCTATTTTTGTTCTATTTATCTCCAAATCTCCATGCCCAACAAAGTTATTCAGGAAACGCGGTCATGGATTGTGATA ATAGCGATGCAACGGGTCCATCTCCAGCTTTTCTCTACACCTGCAACGGCAAGAATCGATCCTGCCAAGCCTTTCTCATCTACAAATCTCAGCCTCCTTA TAACACAATCTCTAGTATTTCAAACCTCCTGTCTGCAGACCCACTTGAGCTTGCTCGCATCAACAATTTCTCAAGCTCAGCTGTCTTCCCAACAGATAAA GAGGTAATAGTTCCTGTACTTTGCTCCTGCTCAGGGAAATACTATCAGGCCAACACCTCTTACACAATTCCAAGTAATTATGATACATATTTTACAATTG CCAACTACACTTATGAGGGTTTAGCAACTTGTAGCTCTCTTATTCACGAAAACAATTACAGCGAATTTGGCTTGGATATTGGTATGAAACTGCAGGTGCC ACTTAGATGTGCTTGTCCTACAAGCAATCAAACCAAAAATGGCACAAAGTATCTATTAAGTTACTTGGTCAGTTGGGGTGATGAAGTTCGTAATGTCAGT AGGAGATTCTATGCGAGCACAAACAGTGTAACCTATGCAAATGGGTTCACTGAAGATAATCCAACTGTTTTTCCTTTTACCACTATTCTTATTCCACTGT CAAATGAACCTTCAAGCTCTCAAACCATAATTCACTATCCACTACCGCCCAATTCTTCTCCTTCCAATCCATTTCATCGGATCGAGAGACCAGGTAAGGG ATCTCAAAGAACAATCACAATTGGAATTTCCTTGCTAGTCATGTCCTTCATTTTATCTATGGTCTTGTTGCTTTACAAAAAGAAAATATATGGAGCTCGG AAGGATGGAAAGGAGAAAAATATATTATCTATGTCAGAAGAATTCCGACATCGCGTTGCTGAGGTAGATCAAGGGTTGAAAATCTACAAATTTGAGGAGC TAAGGGTGGCTACCAAAGATTTCAGCACCGGAAATAGGTTGAGTTGTTCCGTCTATCAAGGGGTACTCGGTGGACAAGTAGTAGCGATAAAAAAGATGAG CAAAGATGTATCTAATGAGGTGATTTTTCTGAGAAAGACTAACCACTTCAATTTAATAAGGCTTTATGCTGCGTGTAAGCATCAGGAGGGTTTCTACCTT ATCTATGAGTTTATGGAGAATGGTTCTTTGAGTGATTGGCTCTGCAGAAAGGATTGTCTTGAAGTTCAAAGTTGGAATTATAGGATTCAGATTGCCTTGG ATGTTGCTAATGGGCTTCACTATCTTCACAACTTCACTGATCCTATATGTGTGCACAAGCGCATCTGTAGCAGCAATGTTCTACTCAACAGACATTTAAG GGCTAAAATTGCTAACTTCAGCTGTGCACATTCAGCAAAGCAAGAAGAATACATGAATTCTTCAATGAGGTTGGCGTTGGGGGAAAAAGGTTACATGGCT CCTGAGTATATAGAATATGGCTTGGTGGCTCCTGAGATTGATGTATATGCTTTCGGGGTTGTTCTGCTGGAATTAGTAACTGGAAAGGAAGCAGTTTTTA TACAGGATGAAGAAGAAATGCAATTATCGGAAGCAATAATTTCAATTATGGAGGAAGGTGATGGAGAAGCTGAACTTGGTGGCCTTATAGATCCTTGTCT GATGGAGAAGTGTAGTATGAAACTTGTCCTGCGACTGGTGAAGTTGAGTCTAGCCTGCTTGGAACAAGAACCAGAACGTAGACCAAGTATGGGTGAAATA GTCTCCTCACTTTTGAAGATTCAAGTTGATGTACAGAAATCAGAACCATATTTGTGGAGGGGGGGCAATTTCTGA
AA sequence Show only first row Show all	>Potri.005G128300.1 pacid=42802921 polypeptide=Potri.005G128300.1.p locus=Potri.005G128300 ID=Potri.005G128300.1.v4.1 annot-version=v4.1 MNQLLLSLLFLFYLSPNLHAQQSYSGNAVMDCDNSDATGPSPAFLYTCNGKNRSCQAFLIYKSQPPYNTISSISNLLSADPLELARINNFSSSAVFPTDK EVIVPVLCSCSGKYYQANTSYTIPSNYDTYFTIANYTYEGLATCSSLIHENNYSEFGLDIGMKLQVPLRCACPTSNQTKNGTKYLLSYLVSWGDEVRNVS RRFYASTNSVTYANGFTEDNPTVFPFTTILIPLSNEPSSSQTIIHYPLPPNSSPSNPFHRIERPGKGSQRTITIGISLLVMSFILSMVLLLYKKKIYGAR KDGKEKNILSMSEEFRHRVAEVDQGLKIYKFEELRVATKDFSTGNRLSCSVYQGVLGGQVVAIKKMSKDVSNEVIFLRKTNHFNLIRLYAACKHQEGFYL IYEFMENGSLSDWLCRKDCLEVQSWNYRIQIALDVANGLHYLHNFTDPICVHKRICSSNVLLNRHLRAKIANFSCAHSAKQEEYMNSSMRLALGEKGYMA PEYIEYGLVAPEIDVYAFGVVLLELVTGKEAVFIQDEEEMQLSEAIISIMEEGDGEAELGGLIDPCLMEKCSMKLVLRLVKLSLACLEQEPERRPSMGEI VSSLLKIQVDVQKSEPYLWRGGNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	1.73	0.9820
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138401 [exp]	2.00	0.9806
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	3.00	0.9802
AT1G49000			unknown protein		Potri.010G130600 [exp]	3.16	0.9777
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	5.91	0.9757
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	6.00	0.9789
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	6.00	0.9739
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	7.34	0.9633
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	7.34	0.9762
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	7.41	0.9715	1

Compare expression of checked genes

Potri.005G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.