Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 196 / 6e-58 Protein kinase superfamily protein (.1) AT3G21630 183 / 3e-53 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 149 / 7e-41 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G02010 149 / 1e-40 Protein kinase superfamily protein (.1) AT1G67720 142 / 7e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G19300 141 / 8e-38 Protein kinase superfamily protein (.1) AT5G25930 139 / 8e-37 Protein kinase family protein with leucine-rich repeat domain (.1) AT2G20300 137 / 2e-36 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G42440 131 / 1e-35 Protein kinase superfamily protein (.1) AT5G65700 135 / 2e-35 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032300 [exp] 507 / 8e-179 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 209 / 4e-63 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 202 / 1e-60 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 201 / 4e-60 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 201 / 5e-60 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.001G332800 [exp] 182 / 2e-52 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032100 [exp] 178 / 4e-51 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 172 / 4e-49 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 170 / 1e-48 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016793 [exp] 388 / 4e-132 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 387 / 5e-126 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019662 [exp] 343 / 2e-117 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10039406 [exp] 201 / 1e-61 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10041171 [exp] 202 / 8e-61 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10021889 [exp] 201 / 2e-60 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 191 / 6e-56 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10022345 [exp] 183 / 6e-53 AT3G01840 429 / 1e-141 Protein kinase superfamily protein (.1) Lus10000577 [exp] 179 / 2e-51 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 178 / 2e-51 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G128401.1 pacid=42804095 polypeptide=Potri.005G128401.1.p locus=Potri.005G128401 ID=Potri.005G128401.1.v4.1 annot-version=v4.1 ATGGAGGGCACGATGGATCTAAATGAACATTATAAGATACGAGGATCAGTATATAGGGCCAAAATCAATGGCCGGGTCTTGGCAGTGAAGAAAACCAAGG ATGATGTCACAGAAGAACTAAAGATTTTGCAGAAAGTCAGTCATGCAAATCTGGTTAAACTAATGGGGATGTCATCTGGATTTGACAGAGAAGGAAATCG CTTCTTGGTCTATGAATATGCAGAAAATGGGTCGCTGGAAAAATGGTTGCATCCCACCTCTGAATCTTCCTCAAGCTCTGCGGGTTTCCTCACTTGGAGT CAAAGGTTACATGTAGCACTAGATGTGGCCAATGGCCTGCAATACATGCATGAACACACTCAACCAAGCATCGTTCACAAGGATATTCGAACAACTAATA TTCTTCTCGATTCCACATTTCGGGCGAAAATAGCAAATTTCTCAATGGCTAGACCTGCCACAGACTCATTGATGCCAAAAGTTGATGTATTTGATTATGG AGTTGTTTTGTTACAATTGCTTTCTGGAAAGAAGGCCATGGTAACCAAAGAAAATGGCGAGATTGTTCTGCTGTGCAAGGAAATCAAAGCCGTCTTGGAA ATTGAAGAGAAAAGAGAAGAGAGTCTAAGAAAGTGGATGGATCCCTGCTTGGAGAGGTTTTATCCCATTGATAGTGCTCTGAGCTTGGCAACCTTGGCAA GGTTGTGCACTCTGGAGGAGTCTTCAGAAAGGCCAAGCATGGCAGAAATTGTCTTCAACCTCACAGTTCTCACTCAGTCACCTCCTGAGACATTTGAAAG ATGGACATCTGGGATGGAAACAGAAGATTTTACTCGACTCATCAGCCCTGTCACAGCTCGTTGA
AA sequence Show only first row Show all	>Potri.005G128401.1 pacid=42804095 polypeptide=Potri.005G128401.1.p locus=Potri.005G128401 ID=Potri.005G128401.1.v4.1 annot-version=v4.1 MEGTMDLNEHYKIRGSVYRAKINGRVLAVKKTKDDVTEELKILQKVSHANLVKLMGMSSGFDREGNRFLVYEYAENGSLEKWLHPTSESSSSSAGFLTWS QRLHVALDVANGLQYMHEHTQPSIVHKDIRTTNILLDSTFRAKIANFSMARPATDSLMPKVDVFDYGVVLLQLLSGKKAMVTKENGEIVLLCKEIKAVLE IEEKREESLRKWMDPCLERFYPIDSALSLATLARLCTLEESSERPSMAEIVFNLTVLTQSPPETFERWTSGMETEDFTRLISPVTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	0	1
AT5G37490			ARM repeat superfamily protein...		Potri.004G083900 [exp]	4.24	0.7653
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.009G138400 [exp]	4.47	0.7191
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.002G129400 [exp]	4.89	0.7363	PDE135.2
					Potri.005G084100 [exp]	9.89	0.7051
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	10.58	0.7332
					Potri.006G090066 [exp]	21.90	0.6707
AT3G09280			unknown protein		Potri.006G092200 [exp]	25.53	0.6276
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	28.89	0.7376
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.002G016100 [exp]	32.55	0.6929
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	34.64	0.6479

Compare expression of checked genes

Potri.005G128401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.