Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66631 749 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16890 96 / 2e-20 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT4G31850 92 / 6e-19 PGR3 proton gradient regulation 3 (.1) AT3G06920 91 / 1e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18900 91 / 1e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT3G22670 88 / 4e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 89 / 6e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 87 / 1e-17 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 86 / 5e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 82 / 7e-16 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127500 [exp] 100 / 9e-22 AT2G01390 635 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 99 / 3e-21 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G124900 [exp] 94 / 1e-19 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068400 [exp] 87 / 5e-18 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 88 / 8e-18 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.004G205600 [exp] 87 / 1e-17 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 85 / 4e-17 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G105900 [exp] 85 / 4e-17 AT4G01400 576 / 0.0 unknown protein Potri.003G105700 [exp] 84 / 1e-16 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022487 [exp] 831 / 0 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016792 [exp] 412 / 5e-139 AT5G66631 328 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033110 [exp] 91 / 2e-18 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10003424 [exp] 90 / 3e-18 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10043417 [exp] 89 / 6e-18 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019200 [exp] 88 / 9e-18 AT1G13630 690 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10026884 [exp] 87 / 1e-17 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10011464 [exp] 87 / 2e-17 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036839 [exp] 87 / 2e-17 AT1G13630 673 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028525 [exp] 86 / 2e-17 AT2G01390 605 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G128600.1 pacid=42802336 polypeptide=Potri.005G128600.1.p locus=Potri.005G128600 ID=Potri.005G128600.1.v4.1 annot-version=v4.1 ATGAATATCACTCGTCTTTCGCGTGCCATAATCCCCATCAACCATCAAGTTCGCTACTTTGTTAGAGACCCATTTCCTAACAAGTTCACCCATTACCTCC GCCGTGCCGAGCTAATTAATTCAATTAGACTTGTTCTTCGTTCAAACAACCCCAATTCACTCCAAACCATCATCAATACTCGTCTTTTGGACACTTTTGT GGTCACTCAGGCTCTACGTTCTGCTCCTAATGCTGATGCCGTTCTTTCTTTTGTTGATTCATTAAAGAAAGTAGATAATACAGCGCATCTTTCTCGGCAT CAAAGTACCCTCCATGCGCTGGCCACGGTGCTAGCCAAGTGGCAGCGGGGTTTGGAACTGAAAGCTTTGATTGGTGAAATTAATGAGGGGAAATATGGTA ATGTTCGCTTTAGTTTTATGAACCTTATGCAATGGTATGCTGCCACTGGAGATCTAGAGGCAGTTTTAGATGTTTGGAAGCAGTATAGAAACGGTGATAA GCGTGTGTGTACTGAGTCATATAATATTGTTATGGGTTTGTATGCTCAGAAGGGGAGGGATTGTGAGGCTGTAAGGGTTTTTTATAGGATGATTCATGAA GGGGCAATTCCGAATTCTAGAACATATACAGTTATGATTGAGCATCTTGTTAATTCGGGGAAATTGGATCCAGCAATTGAGATTTTTAGTGTATTGCCGT TAATGAGGATTAAACGAACTTTAAAGCAGTATTTGGTTTTGGTGGAAGGTTTTGTGGGTTTGGAACGGTTTGATGGAGTTAGAACTTTGCTTGATGAAAT GCGGGCTGATGGGAAGTTTCCTGGCCGTGCCATGCGTAAGGCCCTACAGTGTTTGCAGGAGGCAGGGTTCGTTGAGGAGACAGAAGAGTTTCTCAAGGAA ATGTTTCCGGACGAGAGAATAAAGAGTATAAGCAATAGTGGGGATATCAGTTTTGATAAGGATGGTGATGAGGATGGTGATGAGGATGAGGATGAGGATG AAAACCATGGTTGTGCTTTTGCAGACATACAAGAAGTTCGGTTGAAACCATGGTTGGACCCCAGAGCTTTGGCTAAGGCCTTGAATAAATGGAGCCCTGA TGTGGTGTCCGCATTGGAGGATGCGAAATTTGTTTGGACCACTCGGTTGGTTTGGAAAGTTCTTAGAAACATTAATTCACCAGAAACAGCTTGGGATTTC TTCTGTTGGGTTGCTTATCAGCCGGGATTCACTCATTGTGTTTATACAGTACAACGGATGATGACACTTTTAGCGAAACATGGAAAGGTTGAATTGGTTG ATCAACTCATAAACAAGATAAGAAGTGAGGGAATGAGGTTGCCTTTTAGCACCATCAGATTGATTATTGACTTCTGTGGTATTTCAAAGAATGCCGATGC TGCTCTAAAGGTCTTCCGCGAGGACAGAGCACTCTGTGGTCCCATAACAAAATATAATCTGATGCTTTTGTATTCATCTCTCATACGAACATTGACCAAG TGCAAGAGAGATTCTGATGCCATTGATGTGCTTGAAGAGATGATTTTATGTGGGATATGCCCAGATATTCAGACATTTTCTGGATTGATGTATCACTTTG CATCGCAAGGAGATATTAAAACCGTGCAGAAACTGTTAACAATAGTTCGGCAGAGCGATGTAGAACCAGATGCTTACATGTACAAAGTATTGATCCAAGC TTATTGCAAATGTGATAGAGCTGCTCTTGCATGGAGGATTTTTGAAGACATGAAGAACTCAAATTTGATACCTGATGCTGCAACAAAAGATTTGCTTGTG AAGAGTCTTTGGAAGGAAGGCAAGCTGAAAGAGGCTGCCACTGTAGAAGAAAGCTGCGACGGAATAAATTCTGTCCTTCCACTTAAACAGCATGGTCATA AATGGACAGTGAGCTCTGCCGATCTCGCAAAAATCTATAATCTCTATTCAAACAGTTTTAAGTTGAGCAATGGCCACTAG
AA sequence Show only first row Show all	>Potri.005G128600.1 pacid=42802336 polypeptide=Potri.005G128600.1.p locus=Potri.005G128600 ID=Potri.005G128600.1.v4.1 annot-version=v4.1 MNITRLSRAIIPINHQVRYFVRDPFPNKFTHYLRRAELINSIRLVLRSNNPNSLQTIINTRLLDTFVVTQALRSAPNADAVLSFVDSLKKVDNTAHLSRH QSTLHALATVLAKWQRGLELKALIGEINEGKYGNVRFSFMNLMQWYAATGDLEAVLDVWKQYRNGDKRVCTESYNIVMGLYAQKGRDCEAVRVFYRMIHE GAIPNSRTYTVMIEHLVNSGKLDPAIEIFSVLPLMRIKRTLKQYLVLVEGFVGLERFDGVRTLLDEMRADGKFPGRAMRKALQCLQEAGFVEETEEFLKE MFPDERIKSISNSGDISFDKDGDEDGDEDEDEDENHGCAFADIQEVRLKPWLDPRALAKALNKWSPDVVSALEDAKFVWTTRLVWKVLRNINSPETAWDF FCWVAYQPGFTHCVYTVQRMMTLLAKHGKVELVDQLINKIRSEGMRLPFSTIRLIIDFCGISKNADAALKVFREDRALCGPITKYNLMLLYSSLIRTLTK CKRDSDAIDVLEEMILCGICPDIQTFSGLMYHFASQGDIKTVQKLLTIVRQSDVEPDAYMYKVLIQAYCKCDRAALAWRIFEDMKNSNLIPDAATKDLLV KSLWKEGKLKEAATVEESCDGINSVLPLKQHGHKWTVSSADLAKIYNLYSNSFKLSNGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	0	1
AT2G37020			Translin family protein (.1.2)		Potri.006G126200 [exp]	1.41	0.8354
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	5.38	0.7646
AT1G10865			unknown protein		Potri.010G248800 [exp]	8.66	0.7849
AT2G15000			unknown protein		Potri.009G093400 [exp]	10.00	0.8178
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	10.34	0.8451
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.005G060600 [exp]	12.88	0.7235
AT1G03650			Acyl-CoA N-acyltransferases (N...		Potri.013G134102 [exp]	13.85	0.7621
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	15.09	0.7789
AT5G64650			Ribosomal protein L17 family p...		Potri.005G061700 [exp]	15.19	0.7744
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	16.73	0.7438

Compare expression of checked genes

Potri.005G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.