Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36860 661 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT1G19270 564 / 0 DA1 DA1 (.1) AT2G39830 489 / 2e-169 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66620 375 / 4e-123 DAR6 DA1-related protein 6 (.1) AT5G66610 368 / 1e-121 DAR7 DA1-related protein 7 (.1.2) AT5G66630 330 / 3e-105 DAR5 DA1-related protein 5 (.1) AT5G17890 339 / 4e-103 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 308 / 9e-100 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128900 [exp] 912 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 753 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.002G132700 [exp] 625 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 621 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.010G197500 [exp] 507 / 1e-176 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 175 / 2e-50 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 89 / 5e-21 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022486 [exp] 700 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 685 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10032736 [exp] 585 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10010033 [exp] 568 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 566 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10018789 [exp] 517 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10040258 [exp] 501 / 8e-171 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 388 / 2e-129 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 175 / 4e-52 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain CL0126 [poplar] [flax] Peptidase_MA PF12315 [poplar] [flax] DA1-like Protein DA1
Representative CDS sequence Show only first row Show all	>Potri.005G128800.10 pacid=42803121 polypeptide=Potri.005G128800.10.p locus=Potri.005G128800 ID=Potri.005G128800.10.v4.1 annot-version=v4.1 ATGAATTATTCAAAAGACCAAAATTCACCAGCCTGCTACCGAAAAACCTATTGTACTATGGATTGGTGGACCAATGTTCTCGAAGGTTCTAGCAGTAGAG GGCACTATCCTGGGAGACATGGAGAAGATAGGTATTGGGATGAGCCTCGCCAATCAGTGGATGATTTATTGAATTTTGACAATGAAGAAATCGAATATGC TATTGCACTTTCCCTTTCCGAAGAAGATCAAAAAGGAAAAAAAGTAATTGAGGAAGATAATGAGTCTGAACAGTCAGAGGAATATTACAAGCCCCACCAG CCAGAGGAGGATGTGACAGCTCAATTGGAAGAAGATGAGCAACTTGCCAAAGCAAGTCAAGAAAGTTTAAGTTTGGAGTCTCCTCCTCGAGCTCGATATG ACGGTGGAAATCTAGTTCCACCTTATCCATTTTCATCTGGTTACAGGATCTGTGCTGGGTGCAACACTGAGATTGGGCATGGACAGTTTTTGAATTGCAT GGGTGGTGTTTGGCATCCTGATTGTTTTTGTTGCAATGCTTGCAATCTGCCAATTACTGATTATGAGTTTTCAATGTCTGGGAATCGTCGGTATCACGAA TCTTGTTATAGGAAGCAGGATCATCCAAGATGCGATGTCTGCAACAAATTTATTCCTACAAATTCAGCAGGGCTCATTGAGTTTAGGGCTCATCCTTTCT TGCTACAAAAATACTGTCCCTCACATCAGCGTGATAGGACTCCTCGTTGCTGTAGTTGTGAGAGAATGGAGCCTAGGGACACTAGATATGTATCGCTTGA TGATGGCAGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAACCTCTTTACTTTGAAATTCGAAAATTTTATGAAGGT TTAAATATGAAGGTCGAGCAGGAAATACCCTTACTTTTGGTTGAGAGACCAGCCCTGAATGAGGCTATGGAAGGAGAAAAGAATGGTCATCATCACTTAC CTGAAACCAGAGGACTCTGCTTGTCGGAAAAACAAACTGTTCCCACTGTTTTGAGGTGGCCAAGGATTGGGGCAGGAAACCGTTTCATAGACATAAGAAT AGAACCTTATAGGCTAAGTCGTAGGTGTGAAGTAACTGCAATTCTCATTCTGTATGGCCTTCCCAGGTTGTTGACGGGTTCAATTTTGGCTCATGAGATG ATGCATGCTTGGCTTCGACTTAAAGGTTATCCCAACCTACGTCCAGAGGTCGAAGAAGGCATATGCCAGGTCCTGGCTCATATGTGGCTAGATTCTGAGA TATATTCTAGTTCGGGAGGTGAAGGTGCTTCGTCGTCATCCTCATCCTCATCACCGTCATCATCTTCTTCCACATCATCAAAGAAAGGGCCGCGATCTGA CTTTGAGAAGAAACTTGGTGAGTTTTTCAAACACCAGATCGAGTCAGATACATCGCCAGATTATGGAGAAGGTTTCAGGATAGGTAACCAGGCAGTGCTG AACTATGGCCTCAGGAGAACCCTTGACCACATTCAGATGACAGGAACCTTTCCTGTCTGA
AA sequence Show only first row Show all	>Potri.005G128800.10 pacid=42803121 polypeptide=Potri.005G128800.10.p locus=Potri.005G128800 ID=Potri.005G128800.10.v4.1 annot-version=v4.1 MNYSKDQNSPACYRKTYCTMDWWTNVLEGSSSRGHYPGRHGEDRYWDEPRQSVDDLLNFDNEEIEYAIALSLSEEDQKGKKVIEEDNESEQSEEYYKPHQ PEEDVTAQLEEDEQLAKASQESLSLESPPRARYDGGNLVPPYPFSSGYRICAGCNTEIGHGQFLNCMGGVWHPDCFCCNACNLPITDYEFSMSGNRRYHE SCYRKQDHPRCDVCNKFIPTNSAGLIEFRAHPFLLQKYCPSHQRDRTPRCCSCERMEPRDTRYVSLDDGRKLCLECLDSAIMDTHECQPLYFEIRKFYEG LNMKVEQEIPLLLVERPALNEAMEGEKNGHHHLPETRGLCLSEKQTVPTVLRWPRIGAGNRFIDIRIEPYRLSRRCEVTAILILYGLPRLLTGSILAHEM MHAWLRLKGYPNLRPEVEEGICQVLAHMWLDSEIYSSSGGEGASSSSSSSSPSSSSSTSSKKGPRSDFEKKLGEFFKHQIESDTSPDYGEGFRIGNQAVL NYGLRRTLDHIQMTGTFPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	0	1
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	3.16	0.6683
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	4.35	0.7350
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Potri.009G165600 [exp]	6.48	0.7157
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128900 [exp]	6.92	0.7104
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.005G215200 [exp]	10.39	0.7118
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.001G237100 [exp]	19.44	0.6581
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	21.54	0.5982
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	29.93	0.6180
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	32.86	0.5884
AT4G19860			alpha/beta-Hydrolases superfam...		Potri.012G121596 [exp]	33.54	0.5852

Compare expression of checked genes

Potri.005G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.