Plant FIBer expression Database

Potri.005G129050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G129100
[exp]
49 / 9e-09 ND /
Potri.005G129350
[exp]
46 / 1e-07 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G129050.1 pacid=42805049 polypeptide=Potri.005G129050.1.p locus=Potri.005G129050 ID=Potri.005G129050.1.v4.1 annot-version=v4.1
ATGGCGAGAGAGTTCATAGTTCATGATGGTAGTACTGTCCATTCAGAAGCAGGCTTCCTACTTGATTCCTCTGAGGCTTTTCTGTTGTTATGCATGATTG
TTGTTTCCTTGTCAATTATTTCAATGGTCATATTCGCTTGTGGTGATAGTGGTTCAGGCGGAGGTGGAGGCCGCCGCAGAAAATCTGGAGGAGGTGGTTG
TGGTGGAGGTGGTTGTGGTGGAGGTGATGGAGGAGGTGGTTGTGGTGGAGGTGGTGGTTGTGGTGGAGGTACTGGAGGAGGTGGTTGTGGTGGAGGTACT
GGAGGTGGTTAA
AA sequence
>Potri.005G129050.1 pacid=42805049 polypeptide=Potri.005G129050.1.p locus=Potri.005G129050 ID=Potri.005G129050.1.v4.1 annot-version=v4.1
MAREFIVHDGSTVHSEAGFLLDSSEAFLLLCMIVVSLSIISMVIFACGDSGSGGGGGRRRKSGGGGCGGGGCGGGDGGGGCGGGGGCGGGTGGGGCGGGT
GGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G129050
[exp]
0 1
AT5G03610 GDSL-like Lipase/Acylhydrolase... Potri.010G236800
[exp]
1.73 0.9589
AT5G24090 ATCHIA chitinase A (.1) Potri.015G023900
[exp]
2.44 0.9555 CHI3.7
AT5G24090 ATCHIA chitinase A (.1) Potri.015G024150
[exp]
2.82 0.9571
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.018G011500
[exp]
7.21 0.9483
AT1G16260 Wall-associated kinase family ... Potri.001G040628
[exp]
12.84 0.9547
AT5G24090 ATCHIA chitinase A (.1) Potri.012G033899
[exp]
20.49 0.9387
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.004G192400
[exp]
24.65 0.9519
AT2G22240 ATIPS2, ATMIPS2 MYO-INOSITOL-1-PHOSTPATE SYNTH... Potri.007G089000
[exp]
27.92 0.9173 Pt-MIPS.2
AT5G51920 Pyridoxal phosphate (PLP)-depe... Potri.003G120500
[exp]
28.35 0.9485
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134500
[exp]
30.33 0.9461

Potri.005G129050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.