Plant FIBer expression Database

Potri.005G129350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G129100
[exp]
52 / 5e-10 ND /
Potri.005G129050
[exp]
47 / 6e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G129350.1 pacid=42803084 polypeptide=Potri.005G129350.1.p locus=Potri.005G129350 ID=Potri.005G129350.1.v4.1 annot-version=v4.1
ATGGCGAGAGAGTTCATAGTTCATGAAGGCAGTGTCCATTCAGAAGCAGGCTTCCTGTTTGATTCCTCTGAGGCTTTTCTGTTGTTATGCATGATTGTTG
TTTCCTTGTCAATTATTTCGATGGTCATTTTCGCTTGTGGTGATAGTAATTCAGGAAAAGATCGTCGTCGCCGCTGCTGCAAGGATTTTGCTGAAGGTGA
TTGTTTTGGAGGAGGTGATTGCTGTGGTGGAGATGGAGGAGGTGGTGGAGATGGTGGAGATGGAGGAGGTGGAGGTGGTGGAGATGGAGGAGGTGGTGGA
GGTGGTGGAGATGGAGGAGGTGGAGGAGGTTGA
AA sequence
>Potri.005G129350.1 pacid=42803084 polypeptide=Potri.005G129350.1.p locus=Potri.005G129350 ID=Potri.005G129350.1.v4.1 annot-version=v4.1
MAREFIVHEGSVHSEAGFLFDSSEAFLLLCMIVVSLSIISMVIFACGDSNSGKDRRRRCCKDFAEGDCFGGGDCCGGDGGGGGDGGDGGGGGGGDGGGGG
GGGDGGGGGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G129350
[exp]
0 1
AT3G22560 Acyl-CoA N-acyltransferases (N... Potri.008G154800
[exp]
1.41 0.9245
AT5G24860 ATFPF1, FPF1 ARABIDOPSIS FLOWERING PROMOTIN... Potri.008G209300
[exp]
2.44 0.9068
AT3G56710 SIB1 sigma factor binding protein 1... Potri.001G029700
[exp]
2.64 0.8891
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Potri.016G129100
[exp]
3.46 0.9031
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Potri.002G213100
[exp]
3.74 0.9165
AT1G14370 Kin1, PBL2, APK... PBS1-like 2, kinase 1, protein... Potri.009G020700
[exp]
6.00 0.8838
AT1G75388 CPuORF5 conserved peptide upstream ope... Potri.005G119400
[exp]
6.63 0.8716
AT3G59880 unknown protein Potri.007G145500
[exp]
7.41 0.9020
AT2G23620 ATMES1 ARABIDOPSIS THALIANA METHYL ES... Potri.005G133800
[exp]
7.41 0.8103
AT4G13620 AP2_ERF Integrase-type DNA-binding sup... Potri.017G055400
[exp]
7.48 0.8532

Potri.005G129350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.