Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36870 449 / 7e-147 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 407 / 6e-132 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G34610 259 / 4e-77 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT5G41410 258 / 8e-76 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT2G16400 249 / 6e-74 HD BLH7 BEL1-like homeodomain 7 (.1) AT2G35940 254 / 7e-74 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G75410 242 / 1e-70 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 241 / 2e-70 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT5G02030 206 / 5e-57 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 189 / 3e-51 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032700 [exp] 1116 / 0 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.001G100800 [exp] 296 / 2e-89 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.003G131300 [exp] 293 / 2e-88 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.004G159300 [exp] 275 / 3e-81 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 269 / 3e-79 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.016G069700 [exp] 268 / 6e-79 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 259 / 2e-75 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 246 / 3e-70 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.002G031000 [exp] 244 / 4e-70 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022485 [exp] 415 / 1e-133 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10016790 [exp] 342 / 7e-109 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10004201 [exp] 254 / 2e-73 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 252 / 4e-73 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028770 [exp] 246 / 2e-71 AT5G41410 344 / 2e-110 BELL 1, POX (plant homeobox) family protein (.1) Lus10017481 [exp] 247 / 4e-71 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 246 / 7e-71 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 246 / 1e-70 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10013579 [exp] 239 / 3e-69 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10017513 [exp] 239 / 2e-68 AT5G41410 340 / 1e-108 BELL 1, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.005G129500.4 pacid=42802708 polypeptide=Potri.005G129500.4.p locus=Potri.005G129500 ID=Potri.005G129500.4.v4.1 annot-version=v4.1 ATGGGAATAGCTACACCTCCATTCCCTCCAATTCTCCCTCACTCAAAGACTCACCAGTTAATCTCTCCAAACATTAAGTCCAATCCTTCAAATCATAATT CTATGTCCCAAGATTACCATCAAGGTATTTTTTCCTTCTCCCATGGTGGTTTCGACAGATCCTCCGTATCTCTCCAAGAGCATAATCAACAGCAGCAGCA GCAGCAGCAGCAACACGATATAGCCCAACAGATCCGCAGAGATAAGCATAGAATCCAATCAGACTATGAACCACCCCCACCGGCATTAGTAGGTATTGAA GAAGAAGAAGAAGAATCAAGTGGCCTTCCGGTCTACGAAACTGCCGGCATGTTATCAGAAATGTTCAATTTCCCTCCTGCTGGTGGACCAGCTGCGGCTG TTGATTTGTTGGATCAGCCTGTACACTCTAATTACCGGACCCAGCCACGACAACAACAACCGGTGACAACCAACGATTGGTATAACAGCAACAACAGGCA AAGTATGGTGGTAGGAGGTTTGGGGATAGGTGATTCCAAGAGTAATAGTAACCGTGACAGTTTGGCTCAACATCAGCATCAAATTTCAGGCATTAATGCA GATTCAGCTGCAGCCATGCAACTTTTTTTAATGAACCCATCACAACCCAGGTCACCACAATCTCCTTCTCCTTCTCATCATCAAACCCCTCCTTCAACTT CTTCTACACTACACATGTTGTTACCAAATCCTTCAAGTTCTCTTCAAGGGTATATTGCTGTGTCAGGAGGAGGTTTTGGTGCTACAAGTGTTATATCTCC ACCACAATTCACTTGGGTTCCTGATAGTTCTCATGAAGGAGGCAATACTGGTGCTCCACTCAATAATCCAAGTGAAATTAGTGGTGTTGTTGAAGGGCAA GGACTTTCTCTATCATTATCATCATCTTTGCAACATTTAGAGGCAGCAAAAGCAGAAGAATTGAGGATGGAAAGTGGTGGGTTATTGTATTATAATCAAG GAGCTGGTGGATCATCTTCTGCTCAATATTACAAGAATTTGGGAGGCCACCAACACCATCAAGCATTACATTTACAAGGAGGAGTGGGACAAAACCACCA CCAAGTTCATGTTGGCTTTGGGTCATCATTAGGAGTGGTGAATGTTTTGAGGAATTCAAAGTATGTGAGAGCAGCACAAGAGTTGTTAGAAGAGTTTTGC AGTGTCGGAAGAGGTCAGTTCAAGAAAAGCAAATTTGGTAGACAAAACACAAACCCTAGTTCTAATAACAATCCCGGCGGCGGCGGCGGCTCTTCTTCTT CAACTAAAGATCCCCTTCCCTTGTCAGCTGCTGATAGAATTGAGCATCAAAGAAAGAAGGTCAAACTGTTGTCCATGCTTGATGAGGTGGATAAGAGGTA CAACCATTATTGTGAGCAAATGCAAATGGTAGTGAACTCATTTGATCTAATAATGGGTTTCGGCGCGGCTGTCCCTTACACTGCCCTTGCCCAGAAGGCA ATGTCAAGGCATTTTCGGTGTCTAAAAGAAGCAATATCAGCGCAATTGAAGCATAGCTGTGAGCTAGTTGGAGACAAAGATGGTGCTGGGACCTCAGCTA TAACAAAAGGAGAGACACCAAGGCTTAAGTTATTAGAGCAAAGTCTTAGACAACAAAGAGCCTTTAACCAGATGGGCATGATGGAACAAGAAGCTTGGAG ACCCCAAAGAGGCTTGCCTGAACGATCTGTCAACATTCTAAGAGCCTGGCTTTTTGAGCATTTTCTCCACCCGTATCCAAGCGATGCTGATAAGCATCTG TTAGCTAGACAGACTGGTTTATCGAGAAATCAGGTGTCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTTGAAGAAATGTACCAGC AAGAAGCCAAAGAAGAGGAACCAGGGGCAGAAGATAGAGAAAGGAAGCCAACCAGCAGCAACAACAACAGCAACAATCGTGGGCTTGCACAAACACCAAC GCCTACTACAACAACGACAGGATCATCAGCACCAGCTGCCACAACAACAGCCCCCACAGCTACAACCATACCATCAGGCAAAAGATCCGAAATCAATGCC AATGAAAAGGACCCTTCACTCCTTGCCATCAATAGACAATGTTTCTCGGAAAACCAAGCTAAACTCTCCACCTCCTCCTCCACCACCATTATTACACCCA CCAATATCACCTCCACCACAGAGGTCGCACCACAACCTCATGCTGGACAATCCTTCCATGACTTCGCTGACGATACATGTCGCCAGGGCAGCATTGTTAC AGCTGATTATGGGACCACATCCGGCAATGCCAATGCTGGTGCTGACCACATTGGGTCTACACTTATAAGGTTTGGGACCTCTACTGCTGGAGATGTGTCT CTCACTCTAGGGCTACGCCATGCTGGAAACGTGCCTGACAAGAGCCCTACTTTCTCTGTTAGAGATTTTGGGGGTTGTTAA
AA sequence Show only first row Show all	>Potri.005G129500.4 pacid=42802708 polypeptide=Potri.005G129500.4.p locus=Potri.005G129500 ID=Potri.005G129500.4.v4.1 annot-version=v4.1 MGIATPPFPPILPHSKTHQLISPNIKSNPSNHNSMSQDYHQGIFSFSHGGFDRSSVSLQEHNQQQQQQQQQHDIAQQIRRDKHRIQSDYEPPPPALVGIE EEEEESSGLPVYETAGMLSEMFNFPPAGGPAAAVDLLDQPVHSNYRTQPRQQQPVTTNDWYNSNNRQSMVVGGLGIGDSKSNSNRDSLAQHQHQISGINA DSAAAMQLFLMNPSQPRSPQSPSPSHHQTPPSTSSTLHMLLPNPSSSLQGYIAVSGGGFGATSVISPPQFTWVPDSSHEGGNTGAPLNNPSEISGVVEGQ GLSLSLSSSLQHLEAAKAEELRMESGGLLYYNQGAGGSSSAQYYKNLGGHQHHQALHLQGGVGQNHHQVHVGFGSSLGVVNVLRNSKYVRAAQELLEEFC SVGRGQFKKSKFGRQNTNPSSNNNPGGGGGSSSSTKDPLPLSAADRIEHQRKKVKLLSMLDEVDKRYNHYCEQMQMVVNSFDLIMGFGAAVPYTALAQKA MSRHFRCLKEAISAQLKHSCELVGDKDGAGTSAITKGETPRLKLLEQSLRQQRAFNQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHL LARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEEPGAEDRERKPTSSNNNSNNRGLAQTPTPTTTTTGSSAPAATTTAPTATTIPSGKRSEINA NEKDPSLLAINRQCFSENQAKLSTSSSTTIITPTNITSTTEVAPQPHAGQSFHDFADDTCRQGSIVTADYGTTSGNANAGADHIGSTLIRFGTSTAGDVS LTLGLRHAGNVPDKSPTFSVRDFGGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	0	1
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	1.41	0.7470
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	2.00	0.7996
AT3G08780			unknown protein		Potri.016G126200 [exp]	2.44	0.7240
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.014G146300 [exp]	4.00	0.7031	SDG938
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	6.16	0.6669
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	6.63	0.7286
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	6.70	0.7415
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	7.74	0.6822
AT3G03160			unknown protein		Potri.015G035400 [exp]	9.21	0.6698
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	13.74	0.6487

Compare expression of checked genes

Potri.005G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.