Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50780 622 / 0 unknown protein AT1G63850 340 / 7e-111 BTB/POZ domain-containing protein (.1) AT5G60050 310 / 8e-100 BTB/POZ domain-containing protein (.1) AT2G13690 200 / 1e-57 PRLI-interacting factor, putative (.1) AT3G05675 75 / 3e-14 BTB/POZ domain-containing protein (.1.2) AT2G24692 67 / 6e-14 unknown protein AT4G10800 51 / 7e-07 unknown protein AT3G19920 47 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G032800 [exp] 880 / 0 AT3G50780 654 / 0.0 unknown protein Potri.001G100900 [exp] 358 / 1e-116 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 341 / 4e-110 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 318 / 8e-103 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G058700 [exp] 221 / 3e-65 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.007G109300 [exp] 211 / 2e-61 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.004G154600 [exp] 81 / 4e-16 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 67 / 1e-11 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 65 / 4e-11 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022484 [exp] 651 / 0 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 462 / 1e-161 AT3G50780 408 / 1e-140 unknown protein Lus10024658 [exp] 355 / 5e-116 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10017511 [exp] 347 / 2e-112 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 332 / 1e-106 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 298 / 1e-94 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 288 / 2e-91 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10033484 [exp] 213 / 4e-62 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10020892 [exp] 211 / 4e-61 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10023573 [exp] 87 / 5e-18 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G129700.1 pacid=42802681 polypeptide=Potri.005G129700.1.p locus=Potri.005G129700 ID=Potri.005G129700.1.v4.1 annot-version=v4.1 ATGGCTGAAATTAGACTTACAAGTGTAGGACAAGGTCAAACCAAGATTAGAAATGTTCCAACTGCTTTAACTCAAGAGGGTTTTTGGTGTTGTCCCTCTC CTGTTGTCTTTCAAAACACCATTAAAGCTCAAAATCCTTTAAACAAAACCAAACCCTCTTCACCAACACCTAAGACTACTGTCCAAAAGAAACAGACCCC TTTTAATGAGAGAAAGCCACCACCAACTCCATTAAGATCAGCAGTTGTTTCCGATGATCAACGAAATCGTTGCTCAGATACACCTGGTGTTAGTGTTTCT ATTGTTAACGAGAGAACTCCAAGGCTTAAGATAGAAAGTTTGCCAAGGAAGGTGGCGATTGAATTTGGGGAACCTGGAACCAGTGATATGAAGGTAGTCT TACTTGGAAAGCAAGGTTTTTGTGTGAAGTTGAGTGTCCACAAAAAAGTTCTAGAGGAGAATAGCAGATTTTTTGCCAACAAGCTTTCTGAAGAGGAGTC CAATCTGTCCTGTCTAGAGATTGATGATTGTGAGGATATAGAGATATATGTTGAAACTATGGGACTGATGTATTGCAAGGAGATGAAGCAGAGGTTGATC AAGCAAAGTGTCTCACGCGTGCTTCGAATCCTCAAGTTTGCTGAACTTCTTAGGTTCAACACATGCATCCAGTCATGCTTGGAATATTTGGAAGCAGTTC CATGGGTTGGGGAAGAAGAAGAAGAGAAAGTGATCTCCTTGGTTACACGGCTCCAGAATGAAGGTATCGGGGTCACACCAGTTTTGAAACGAGTCTTTTC TACTGTTGCTAATCCATCTAAAGATACAATTTCCCACATAATGGAACTTGTTCTCAAAAGCAACGAGGAAAAAGGCCGGCGTGAAATGAAATCCATAGTA CAGAAACTCCTTCGTGAAAATAGCAGCCTTCCAAGTTATGCAGGTTCATCTGATATCTGCAACGAAACTATTTATAGCTCCTGCAGAATTTGCTTGAATT CACTACTATCTCTGTTTAAGAAAGCAGCTGAACCCGAGTTTACTGACACGCCTGTAAACAGTAAGCAAACTGTAGTAAAGCAAATAGCTCTTGAGGCTGA TAATCTCTCATGGTTGCTTGAGATTTTAGCTGACAGACAAGCAGCGGATGAATTTGCTCTAATGTGGTCTAGCCAACAAGAGTTGACAGCCCTGCATTCA AAGCTACCAATAGTGTCTCGTTACCATGTTAGCTGCATTACATCAAGGCTATTTGTTGGAATTGGAAGAGGGGAGCTGCTACCTTCAAAAGACACTCGTC ACTTGTTGTTACAAACCTGGTTGCAGCCATTGATCAGTGACTACAGTTGGTTGCAACATGGATGCAGGTCATTTGATAGGAAGGTAGTGGAGGAAGGGAT TGGGAGGACGATTCTCACATTACCCCTGGAGAACCAACAGACCATTTTGCTTTCTTGGTTGGGAACTTTTTTGAAGTCCGGTGATAATTGTCCTAATCTT CAGAGAGCCTTTGAGGTCTGGTGGCGAAGGACTTTCATTAGACCTTACATGGAATGA
AA sequence Show only first row Show all	>Potri.005G129700.1 pacid=42802681 polypeptide=Potri.005G129700.1.p locus=Potri.005G129700 ID=Potri.005G129700.1.v4.1 annot-version=v4.1 MAEIRLTSVGQGQTKIRNVPTALTQEGFWCCPSPVVFQNTIKAQNPLNKTKPSSPTPKTTVQKKQTPFNERKPPPTPLRSAVVSDDQRNRCSDTPGVSVS IVNERTPRLKIESLPRKVAIEFGEPGTSDMKVVLLGKQGFCVKLSVHKKVLEENSRFFANKLSEEESNLSCLEIDDCEDIEIYVETMGLMYCKEMKQRLI KQSVSRVLRILKFAELLRFNTCIQSCLEYLEAVPWVGEEEEEKVISLVTRLQNEGIGVTPVLKRVFSTVANPSKDTISHIMELVLKSNEEKGRREMKSIV QKLLRENSSLPSYAGSSDICNETIYSSCRICLNSLLSLFKKAAEPEFTDTPVNSKQTVVKQIALEADNLSWLLEILADRQAADEFALMWSSQQELTALHS KLPIVSRYHVSCITSRLFVGIGRGELLPSKDTRHLLLQTWLQPLISDYSWLQHGCRSFDRKVVEEGIGRTILTLPLENQQTILLSWLGTFLKSGDNCPNL QRAFEVWWRRTFIRPYME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50780			unknown protein		Potri.005G129700 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	1.41	0.8964
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.010G246800 [exp]	3.31	0.9127
AT2G41550			Rho termination factor (.1)		Potri.016G043300 [exp]	6.00	0.8842
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Potri.017G069600 [exp]	6.78	0.8489
AT4G24630			DHHC-type zinc finger family p...		Potri.007G077000 [exp]	7.07	0.8603
AT3G01750			Ankyrin repeat family protein ...		Potri.001G335400 [exp]	7.48	0.8590
AT5G66600			Protein of unknown function, D...		Potri.004G150000 [exp]	8.48	0.8873
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	8.71	0.8680
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	12.32	0.8527
AT2G26975			Ctr copper transporter family ...		Potri.009G038700 [exp]	14.28	0.8534	Pt-COPT2.1

Compare expression of checked genes

Potri.005G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.