Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23740 1467 / 0 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT2G22740 147 / 1e-35 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 135 / 6e-32 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 123 / 2e-28 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT3G04380 119 / 6e-28 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT5G13960 120 / 2e-27 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G43990 116 / 3e-26 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT3G03750 112 / 3e-26 SUVR3, SDG20 SET domain protein 20 (.1.2) AT1G04050 114 / 2e-25 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G04940 110 / 2e-24 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033000 [exp] 2718 / 0 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G083100 [exp] 152 / 3e-37 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G162801 [exp] 145 / 4e-35 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.016G025300 [exp] 134 / 6e-32 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 132 / 2e-31 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.006G027600 [exp] 128 / 5e-30 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.013G064600 [exp] 121 / 3e-29 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.014G192500 [exp] 125 / 6e-29 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.009G138600 [exp] 122 / 3e-28 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016788 [exp] 1921 / 0 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 1592 / 0 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022482 [exp] 369 / 1e-116 AT2G23740 292 / 9e-90 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10011011 [exp] 166 / 5e-41 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 161 / 1e-39 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 155 / 4e-38 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10002571 [exp] 147 / 2e-36 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 138 / 3e-33 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10022657 [exp] 130 / 3e-32 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10012513 [exp] 131 / 9e-32 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G129800.2 pacid=42802484 polypeptide=Potri.005G129800.2.p locus=Potri.005G129800 ID=Potri.005G129800.2.v4.1 annot-version=v4.1 ATGGATGATGGCAGAGTGAATGACTTATTGCTAAATGTAGAAGAGTCTCGTATAGAAAGACAATGTGAGGGACTAGGGACAGTAGACAAATTGCATATTT CTGAAGGTGGAACTTCATATTCTGATTGTAAGGTAGAGAGCCAAAGGTTATCCTGTGATTCTCAGGATTTTGGAGAAGATGACATAAACGTACAGAATTA TTACACAGAACCCAATGCAGCCTCTGAAAACTCTAATTTAATTGTTGACACCATTGAAAGCGAACCAAACAGCTGTAGGTATGGAGAGCCATCTCTTTTG GAGCCTAACTGGCTAGAACACGATGAATCTGTGGCACTATGGGTCAAGTGGAGAGGCAAGTGGCAGGCTGGAATCAGATGTGCACGGGCAGACTGGCCAT TGTCAACTTTGAGAGCCAAACCAACTCATGATCGAAAGCAGTATTTTGTGATATTTTTTCCTCACACCAGAAATTATTCCTGGGCAGATATGCTGCTTGT CCAACCAATCAATGGATTTCCAGAGCCTATTGCATATAAGACTCACAAAATTGGGCTAAAAATGGTTAAAGATATGAGTGTTGCACGGCGGTTTATAATG AAAAAGCTGGCTGTTGCCATGGTGAATATTGTCGATCAGTTTCATTCTGAGGCTTTAGTAGACCCAGCTCGTGATGTGATGGTCTGGAAGGAATTTGCCA TGGAGGCTTCACGATGTAGTGCTTATTCTGATCTTGGAAGAATGCTTCTGAAACTTCAAAATATGATTTTGCAACAGTACATAAGTTCTGATTGGCTGCA GAATTCTTTTCAATCCTGGGTACAGCAGTGTCAAGTTGCATGTAGTGCTGAATCCATTGAATTGCTTAGGGAGGAATTGTACAATTCTATTCTATGGAAT GAAGTCGATTCTCTCCATGATGCACCAGTGCAATCGACATTGGGATCCGAGTGGAAAACCTGGAAGCATGAAGCTATGAAGTGGTTCTCAACCTCCCAAC CTGTGACAAGTGGTGGAGATATGGAGCAGCAGAACTGTGACAATCTCTCCCCCTCAACCATCAGTCTTCAAGCTACCAGAAAGAGGCCAAAGCTTGAAGT TCGCCGTGCAGAGACACATGCTTCCCAGGTTGAGTCCAGCAGTCCACTTCAAACTACGAATGTCGAAATTGACTCTGAGTTTTTCAGTAATCGAGACACT GTCAATGCTCATACTTTAGAATCAGAGCTTTCTAAGGAGGATGGTTTTGGCGAGGTAGCTGCACCTTTAGAGTCACCTTGTAGCATGGCTGATAGATGGG ATGGGATTGTAGTTGAAGCAGGAAATCCTGAGCTTGTACAGAACAAAGGTGTAGAAATGACACCTGTTAATGAAGTTTTGGCTAAGGAAAGCATAGAACC TGGGAGTAAGAATCGCCAGTGTACAGCTTTTATTGAATCTAAGGGAAGGCAGTGTGTGAGGTGGGCTAATGATGGTGATGTTTATTGTTGTGTGCATCTG GCCTCTCGTTTTGCTGGCAGCTCCACTAGAGGAGAGGCAAGTCCTGTTCATAGTCCTATGTGTGAAGGTACCACTGTTCTTGGTACTCGATGCAAGCATC GGTCTCTACCAGGTACCACATTCTGCAAGAAACACAGACCCTGGCCTGATGCAGAGAAGACCTCAAATTTGCCAGAGAATCCCCTTAAGAGAAAACATGA AGAGATCTTTCCCAGTTCAGACACCACATATTGCAAAGAGATGGTATTGTCTGGACAAGTTGAAAATCCCCTTCGAGTGCAACCTGTCTCAGCCATGGAT GGTGATGCCTTTCATGGAAGGAAAAGCTTACCCGAGAAACTTGAGCATCCTGGCCATGATTGCAATAGCTCCAAGATGCTGCACTGTATTGGCTCAAGCT CCCTTGATAGTAGTATCCTGTGTCCTGAGAGTCCAAAGCGCTATTCGTTGTACTGTGACAAACACATTCCTAGTTGGCTCAAGCGTGCTAGAAATGGTAG AAGTAGGATAATATCAAAAGAAGTGTTTATAGATCTTTTGAAGGATTGTCGCTCACCGCAGCAGAAATTGCATTTACATCAAGCATGTGAGCTTTTCTAC AAGCTTTTCAAAAGCATTTTCTCTCTAAGAAACCCAGTTCCTATGGAGGTTCAACTTCAGTGGGCTCTCTCTGAAGCTTCTAAAGATTTTAATGTTGGGG AACTCTTGTTGAAGTTAGTTTTCACTGAAAAGGAGAGACTCAAAAAGTTATGGGGCTTTGCTGTGGAGGAAGATTTACAAGTTTCCTCTGTCATGGAAGA ACCAGCAATTTTTCCATTGGCTGTCAACTGTAGCCATGATGATGAAAATTCTATTAGGTGCAAAATATGCTCAAAGGAGTTTCTCGATGATAAAGAGCTT GGAAACCACTGGATGGACAACCATAAAAAGGAAGCACAGTGGCATTTCAGAGGTCATGCTTGTGCCATATGCCTGGATTCTTTTACTGACAGAAAAAGTT TGGAAACCCATGTGCAGGAGAGACATCATGTGGAATTTGTTGAACAGTGCATGCTGTTCCAGTGCATTCCTTGTGCCAGCCACTTTGGGAACACTGACCA GTTATGGTTGCATGTCCTCTCTGTTCACCCTGCTGATTTCAGACTGCCAAAAGGTGCTCAACAACTTAATCCGTCTATGGGTGAAGAGAAGGAGGATTCC TTGCAAAAACTTGAGCTGCAAAATGCAGCATCAATGGAAAATCACACTGAGAATTTAGGTGGTGTAAGAAAGTACATTTGCAAGTTCTGTGGCCTGAAGT TTGATTTACTACCTGATCTTGGTCGCCACCATCAAGCTGCTCATATGGGACCAAATCTATTCAGCTCTCGCCCCCCAAAGAGAGGTGTTCGATATTATGC TTATAGATTAAAATCTGGAAGACTTAGCCGCCCGAAATTTAAGAAAGGTCTGGGGGCAGCAACATATAGCAGCATCAGGAACAGGATGACTTCTGGTCTG AAGAAACGTATCCAGGCTTCAAAATCACTTAGCAGCCAGGGACTAAGCATACAGTCTAATTTGACTGAGGCAGGGGCTTTAGGTAGATTAGCAGAATCTC AATGCTCAGCGGTTGCAAAGATATTGTTTTCTGAGGTTCAGAAAACAAAACCTCGGCCTAATAACCTTGATATCTTAGCTATTGCACGCTCTGCTTGCTG CAAGGTGAGCCTAAAAGCATCACTGGAGGGGAAATATGGAGTGTTGCCAGAACGCTTTTATTTGAAGGCAGCCAAGCTCTGCAGTGAGCATAATATTCAA GTACAATGGCACCAGGAGGAGTTTAGTTGTTCCAGAGGATGTAAGAGTTTCAAGGATCCAGGATTATTCTCGCCCTTGATGGCTCTTCCAAATGGTTTTA AGGGGAAACAAATGATACATTCATCTGATCATACAAACAGTGAGTGTGAAGTGGATGAGTGCCACTATATTATAGATGTGCATGATGTTACAGAGGGGCC TAAGCAAAAGGCTACTGTCTTGTGTACTGACATAAGCTTTGGGAAGGAGACAATACCAGTGGCATGTGTTGTAGATGAAGATCTCCTGGATTCCCTCCAT GTCTTGGCAGATGGTTACGATGGTCAAATTAGTAAATTCCCCAAGCCCTGGGATACTTTTACCTATGTAACAGGGCCAGTTCATGATCAATGTGATAGTC TGGACATTGAGGGTTTGCAATTGAGGTGTTCTTGCCAATATTCAATGTGCTGTCCTGAAACATGTGATCATGTTTATCTCTTTGATAACGACTATGAAGA TGCAAAGGACATATATGGGAAATCCATGCTTGGCAGATTTCCGTATGACTATAAAGGGCGGCTTGTTCTGGAGGAAGGTTACCTTGTTTACGAGTGCAAT AGCATGTGCAACTGCAATAAAACATGCCCAAATAGAGTTTTGCAGAATGGAATACGAGTGAAACTGGAAGTCTTCAATACAGATAATAAAGGTTGGGCTG TCAGGGCAGGTGAACCAATCCTACGTGGTACATTTATATGTGAGTACACTGGAGAGATTTTAAATGAACAGGAGGCAAGCAATAGGCGTGACAGGTATGG CAAAGAAGTTTGCAGCTATATGTATAAAATTGATGCTCATACCAATGATATGAGCAGAATGGTTGAAGGACAGGCCCATTATTTTATTGATGCTACAAAG TATGGGAATGTTTCACGGTTCATCAATCACAGCTGCATGCCAAATCTTGTGAACCACCAAGTTCTGGTTGACAGCATGGATTCTCAGCGTGCTCATATCG GTCTTTATGCAAGTCAGGATATAGCTTTTGGTGAAGAACTGACATACAACTATCGGTATGAGCTGCTGCCTGGAGAAGGATATCCTTGCCATTGTGGAGC TTCAAAGTGCCGGGGCCGCCTGTATTAA
AA sequence Show only first row Show all	>Potri.005G129800.2 pacid=42802484 polypeptide=Potri.005G129800.2.p locus=Potri.005G129800 ID=Potri.005G129800.2.v4.1 annot-version=v4.1 MDDGRVNDLLLNVEESRIERQCEGLGTVDKLHISEGGTSYSDCKVESQRLSCDSQDFGEDDINVQNYYTEPNAASENSNLIVDTIESEPNSCRYGEPSLL EPNWLEHDESVALWVKWRGKWQAGIRCARADWPLSTLRAKPTHDRKQYFVIFFPHTRNYSWADMLLVQPINGFPEPIAYKTHKIGLKMVKDMSVARRFIM KKLAVAMVNIVDQFHSEALVDPARDVMVWKEFAMEASRCSAYSDLGRMLLKLQNMILQQYISSDWLQNSFQSWVQQCQVACSAESIELLREELYNSILWN EVDSLHDAPVQSTLGSEWKTWKHEAMKWFSTSQPVTSGGDMEQQNCDNLSPSTISLQATRKRPKLEVRRAETHASQVESSSPLQTTNVEIDSEFFSNRDT VNAHTLESELSKEDGFGEVAAPLESPCSMADRWDGIVVEAGNPELVQNKGVEMTPVNEVLAKESIEPGSKNRQCTAFIESKGRQCVRWANDGDVYCCVHL ASRFAGSSTRGEASPVHSPMCEGTTVLGTRCKHRSLPGTTFCKKHRPWPDAEKTSNLPENPLKRKHEEIFPSSDTTYCKEMVLSGQVENPLRVQPVSAMD GDAFHGRKSLPEKLEHPGHDCNSSKMLHCIGSSSLDSSILCPESPKRYSLYCDKHIPSWLKRARNGRSRIISKEVFIDLLKDCRSPQQKLHLHQACELFY KLFKSIFSLRNPVPMEVQLQWALSEASKDFNVGELLLKLVFTEKERLKKLWGFAVEEDLQVSSVMEEPAIFPLAVNCSHDDENSIRCKICSKEFLDDKEL GNHWMDNHKKEAQWHFRGHACAICLDSFTDRKSLETHVQERHHVEFVEQCMLFQCIPCASHFGNTDQLWLHVLSVHPADFRLPKGAQQLNPSMGEEKEDS LQKLELQNAASMENHTENLGGVRKYICKFCGLKFDLLPDLGRHHQAAHMGPNLFSSRPPKRGVRYYAYRLKSGRLSRPKFKKGLGAATYSSIRNRMTSGL KKRIQASKSLSSQGLSIQSNLTEAGALGRLAESQCSAVAKILFSEVQKTKPRPNNLDILAIARSACCKVSLKASLEGKYGVLPERFYLKAAKLCSEHNIQ VQWHQEEFSCSRGCKSFKDPGLFSPLMALPNGFKGKQMIHSSDHTNSECEVDECHYIIDVHDVTEGPKQKATVLCTDISFGKETIPVACVVDEDLLDSLH VLADGYDGQISKFPKPWDTFTYVTGPVHDQCDSLDIEGLQLRCSCQYSMCCPETCDHVYLFDNDYEDAKDIYGKSMLGRFPYDYKGRLVLEEGYLVYECN SMCNCNKTCPNRVLQNGIRVKLEVFNTDNKGWAVRAGEPILRGTFICEYTGEILNEQEASNRRDRYGKEVCSYMYKIDAHTNDMSRMVEGQAHYFIDATK YGNVSRFINHSCMPNLVNHQVLVDSMDSQRAHIGLYASQDIAFGEELTYNYRYELLPGEGYPCHCGASKCRGRLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	0	1
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Potri.013G068400 [exp]	1.73	0.9037
AT3G16610			pentatricopeptide (PPR) repeat...		Potri.003G006800 [exp]	2.23	0.8925
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	2.44	0.8862
AT1G72390			unknown protein		Potri.003G069200 [exp]	3.74	0.8858
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	4.00	0.9037
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	4.12	0.8525
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	6.32	0.8794
AT3G12590			unknown protein		Potri.008G052700 [exp]	8.06	0.8665
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	8.12	0.8723
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	8.94	0.8838

Compare expression of checked genes

Potri.005G129800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.