Plant FIBer expression Database

Pt-PSBO.1 (Potri.005G130400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PSBO.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50820 547 / 0 OEC33, PSBO2, PSBO-2 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
AT5G66570 545 / 0 MSP-1, PSBO1, OEE33, OEE1, OE33, PSBO-1 OXYGEN EVOLVING ENHANCER PROTEIN 33, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, MANGANESE-STABILIZING PROTEIN 1, PS II oxygen-evolving complex 1 (.1)
AT4G37230 137 / 7e-40 Photosystem II manganese-stabilising protein (PsbO) family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G033700
[exp]
603 / 0 AT3G50820 537 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016783
[exp]
545 / 0 AT3G50820 535 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
Lus10022479
[exp]
541 / 0 AT3G50820 530 / 0.0 OXYGEN EVOLVING COMPLEX SUBUNIT 33 KDA, photosystem II subunit O-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0193 MBB PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Representative CDS sequence
>Potri.005G130400.1 pacid=42804235 polypeptide=Potri.005G130400.1.p locus=Potri.005G130400 ID=Potri.005G130400.1.v4.1 annot-version=v4.1
ATGGCTGCCTCACTACAAGCAGCAGCTACACTGATGCAACCCACCAAGGTGGGTGTGCCTTCTAGGACCAGCCTTCAACTCAGGTCTTCTCAGAGTGTTT
CCAAGGCTTTTGGCTTCGAACCAGCTAGTGCTAGGATTTCCTGCTCTTTGCAATCTGACCTTAAAGACTTGGCTCGAAAGTGTGTAGATGCTAGCAAGAT
CGCTGGCTTTGCTCTTGCTACTTCTGCTCTTGTTGTCTCGGGAGCAAGTGCTGAAGGAGTCCCAAAGAGGCTGACCTATGATGAAATCCAGAGCAAGACA
TACATGGAAGTAAAAGGATCTGGAACTGCTAACCAGTGCCCAACCCTTGACGGGGGAGCTGAGTCATTTGCCTTCAAGCCTGGCAAATACAATGCTAAGA
AGTTCTGCCTGGAGCCAACTTCATTCACTGTCAAGGCTGAAAGTGTAAGCAAGAATGCCCCACCTGAGTTCCAAAACACTAAGCTCATGACACGTTTGAC
CTACACCCTCGACGAGATTGAGGGACCTTTCGAAGTCTCTCCCGATGGAACCATCAAGTTTGAGGAGAAAGATGGTATTGACTATGCTGCTGTGACCGTT
CAGCTGCCTGGTGGCGAGCGTGTGCCTTTCCTTTTCACCATTAAACAATTAGCAGCATCAGGAAAACCAGAGAGCTTCAGTGGAGAGTTCCTTGTACCAT
CCTACCGAGGTTCATCTTTCTTGGACCCAAAGGGAAGAGGTGGCTCAACCGGTTATGACAATGCAGTTGCATTGCCTGCTGGAGGCAGAGGAGATGAGGA
GGAACTACTCAAGGAAAACATCAAGAACACCGCATCATCAACAGGTAAAATCACCCTAAGTGTGACCAAGAGCAAGCCTGAGACTGGAGAGATCATAGGA
GTGTTTGAGAGTCTTCAGCCATCTGATACTGATCTGGGAGCAAAGACTCCTAAGGACGTCAAGATCCAGGGGATCTGGTATGCTCAGCTTGATTAA
AA sequence
>Potri.005G130400.1 pacid=42804235 polypeptide=Potri.005G130400.1.p locus=Potri.005G130400 ID=Potri.005G130400.1.v4.1 annot-version=v4.1
MAASLQAAATLMQPTKVGVPSRTSLQLRSSQSVSKAFGFEPASARISCSLQSDLKDLARKCVDASKIAGFALATSALVVSGASAEGVPKRLTYDEIQSKT
YMEVKGSGTANQCPTLDGGAESFAFKPGKYNAKKFCLEPTSFTVKAESVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFEEKDGIDYAAVTV
QLPGGERVPFLFTIKQLAASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELLKENIKNTASSTGKITLSVTKSKPETGEIIG
VFESLQPSDTDLGAKTPKDVKIQGIWYAQLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50820 OEC33, PSBO2, P... OXYGEN EVOLVING COMPLEX SUBUNI... Potri.005G130400
[exp]
0 1 Pt-PSBO.1
AT3G18890 AtTic62 translocon at the inner envelo... Potri.004G150300
[exp]
2.44 0.9890 Pt-TIC62.1
AT5G19220 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE ... Potri.008G195100
[exp]
2.82 0.9775 Pt-AGPL2.1
AT3G18890 AtTic62 translocon at the inner envelo... Potri.009G111323
[exp]
3.00 0.9869
AT4G28706 pfkB-like carbohydrate kinase ... Potri.002G254500
[exp]
4.00 0.9540
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G040800
[exp]
5.91 0.9715
AT1G72640 NAD(P)-binding Rossmann-fold s... Potri.003G063800
[exp]
9.48 0.9609
AT3G54050 HCEF1 high cyclic electron flow 1 (.... Potri.016G106900
[exp]
10.09 0.9632 FBP.1
AT1G09340 CSP41B, CRB, HI... heteroglycan-interacting prote... Potri.013G006100
[exp]
11.22 0.9625
AT5G35630 ATGSL1, GLN2, G... GLUTAMINE SYNTHETASE LIKE 1, g... Potri.008G200100
[exp]
11.40 0.9605 Pt-NCPGS.8
AT1G31330 PSAF photosystem I subunit F (.1) Potri.001G081500
[exp]
14.42 0.9614

Potri.005G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.