Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66560 733 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G50840 579 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 496 / 3e-168 Phototropic-responsive NPH3 family protein (.1) AT5G03250 411 / 4e-136 Phototropic-responsive NPH3 family protein (.1) AT3G44820 389 / 1e-126 Phototropic-responsive NPH3 family protein (.1) AT5G13600 384 / 3e-125 Phototropic-responsive NPH3 family protein (.1) AT5G48800 320 / 1e-100 Phototropic-responsive NPH3 family protein (.1) AT5G67385 301 / 1e-93 Phototropic-responsive NPH3 family protein (.1) AT1G03010 293 / 4e-90 Phototropic-responsive NPH3 family protein (.1) AT3G08660 282 / 2e-86 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033900 [exp] 996 / 0 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 499 / 8e-170 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 476 / 7e-161 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 425 / 1e-140 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 423 / 4e-140 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 414 / 9e-137 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 412 / 5e-136 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 408 / 3e-134 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 364 / 7e-117 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037432 [exp] 745 / 0 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 743 / 0 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 496 / 2e-168 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 496 / 4e-168 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 393 / 7e-128 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 391 / 1e-127 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 389 / 1e-126 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 388 / 5e-126 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 383 / 1e-124 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 382 / 3e-124 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.005G130700.6 pacid=42805602 polypeptide=Potri.005G130700.6.p locus=Potri.005G130700 ID=Potri.005G130700.6.v4.1 annot-version=v4.1 ATGGCAGCTGAGAAGCCTAGCTCTAAAGGGCAGGCATGGTTTTGCACAACTGGGCTGCCAAGTGACATTGTGATTGAAGTAGAGGACATGACCTTTCACC TCCACAAGTTTCCTTTGACGTCAAGAAGTAGAAAGCTTCATCAATTAATAACAGAGCAAGAAACAAATCCTACAACTTCAACCACTCAAAGAGATGACCA CCAAGAAGAAACAGAAGAAGAAAGAGATGAAATTGAAGAAATCCTTTGTCAAATTTCTCTCCTGGACTTCCCAGGAGGCTCTGAAACTTTTGAGATGGCT GCAAAGTTTTGCTACGGTGTGAAGGTAGACTTAAACTCATCTATCATTGCTCCTCTTCGCTGTGCCGGAGAGTTTCTTGAAATGACAGAAGAGTATTCAG AAGATAATTTAATTTCCAAGACAGAGAGGTTTTTCTCGCAATCTGTGCTTAAAAGTCTTAAGGAGTCTATTAAGGCCTTAAAATCTTGCGAGCGGGTGAT GCCACTCGCTGAGAGTTTAGGCATTACTGAGAGATGCATTGATTCTATTGCTTCGAGAGCTTCCTCTGTCGATCCAGCCTTGTTTGGCTGGCCGGTCAGC GAAGCAGCAAATGAGAATGTTAGAGCTGGTTCCAGTCAGGCCCTATGGAACGGGATTGGATCCACGGTAAGAAGAAAAGGAAGCGGTGCCAAAAGCAATA ATGCGGATTCTTGGTTTGATGATTTGACACTTTTGAGCTTACAGTTGTTCAAGCGGTTGATTTTGGCTATGAAAGTGGGAGATCTGAATCCGGAGATTGT AGAGAGCTGTTTAATGTACTATGCCAAGAAGCACATTCCTGGCATATCAAGATCAAATAGGAGGCCATCTTCTTCATCATCATCTTCAATTGCTTCAGAG CGTGAACAAAGGGAAGTGTTGGAGACTATTGTTTCCCATCTTCCATTGCACAAAAGTTCTAGATCTTCCACAACTACAAGGTTCTTATTTGGTTTGTTAA GAACTGCTAATATACTAAATGCAGCTGAAGAGTGTCAGTCCACATTGGAGAAGAAGATTGGGTTACAACTAGAGCAAGCAACACTAGATGATTTATTGAT TCCTAGCTATTCATATTTGAACGAGACTTTATATGATGTGGATTGCTTGGAGAGAATCCTAGGCCACTTCTTGGATGGACTTGAAGAAGAGAGAAACGCA GGTGAGATTGAAGCTGGCGACGATGGTGGAGGTGGCAATGTGAGACCACCCACTTTAATGCTTGTAGGAAAGCTAATTGATGGCTATCTTGCCGAGATTG GATCAGATGCAAATTTAAAGTCTGATAGGTTCTACAATCTCGCAATTTCACTACCGGAGCAAGCTAGACTCTTTGATGATGGCCTTTACCGAGCTGTAGA TGTGTACCTCAAGTCACATCCATGGACATCAGAGGCGGAGCGAGAGAAGATATGTGGAATCATGGATTGCCAAAAGCTCACAATAGAAGCGTGCACGCAC GCAGCACAAAATGAGCGGCTTCCATTGCGTGCAGTGGTTCAAGTTTTGTTTTTTGAGCAGTTACAACTCCGCCACGCAATTGCAGGGACATTGATTGCAG TGGAGGCTGATTCTGCAAGGCCCTCCCTGCTAAGACGGAGGGAGGAGGAGATAGAGGTAGAGGTAGAGGCAGAGGCAGAAGCAGAAGCAGAAGCAGAAGC AGGGGCAATGCAGGAGGGTAACAGTAACGCTTGGAGGGGAGCGGTGAGGGAAAATCAAGGGCTGAGGCTAGACATGGATAGCATGAGGACTAGGGTACAT CAGCTTGAAAGAGAGTGCTCAAATATGAAGAGGGTGATTGAGAAGATTGACAAGGAGGGTCCACGTGAGCATAACGGAGGGTGGAGAGGGTCCTTGACGA GGAGGTTTGGGTGCAAGTTTAAGACCCAAGTTTGTGATTCTCATGAACAAGCGGTTGTAAATGCTAGGAAGGGAAGACAACATCATCATCATCATCAACA GTAG
AA sequence Show only first row Show all	>Potri.005G130700.6 pacid=42805602 polypeptide=Potri.005G130700.6.p locus=Potri.005G130700 ID=Potri.005G130700.6.v4.1 annot-version=v4.1 MAAEKPSSKGQAWFCTTGLPSDIVIEVEDMTFHLHKFPLTSRSRKLHQLITEQETNPTTSTTQRDDHQEETEEERDEIEEILCQISLLDFPGGSETFEMA AKFCYGVKVDLNSSIIAPLRCAGEFLEMTEEYSEDNLISKTERFFSQSVLKSLKESIKALKSCERVMPLAESLGITERCIDSIASRASSVDPALFGWPVS EAANENVRAGSSQALWNGIGSTVRRKGSGAKSNNADSWFDDLTLLSLQLFKRLILAMKVGDLNPEIVESCLMYYAKKHIPGISRSNRRPSSSSSSSIASE REQREVLETIVSHLPLHKSSRSSTTTRFLFGLLRTANILNAAEECQSTLEKKIGLQLEQATLDDLLIPSYSYLNETLYDVDCLERILGHFLDGLEEERNA GEIEAGDDGGGGNVRPPTLMLVGKLIDGYLAEIGSDANLKSDRFYNLAISLPEQARLFDDGLYRAVDVYLKSHPWTSEAEREKICGIMDCQKLTIEACTH AAQNERLPLRAVVQVLFFEQLQLRHAIAGTLIAVEADSARPSLLRRREEEIEVEVEAEAEAEAEAEAGAMQEGNSNAWRGAVRENQGLRLDMDSMRTRVH QLERECSNMKRVIEKIDKEGPREHNGGWRGSLTRRFGCKFKTQVCDSHEQAVVNARKGRQHHHHHQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.005G130700 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	1.41	0.7618
AT3G13690			Protein kinase protein with ad...		Potri.001G200000 [exp]	3.60	0.7067
AT5G45540			Protein of unknown function (D...		Potri.015G112012 [exp]	16.12	0.7452
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	20.00	0.7203	RAP15
AT4G39790			Protein of unknown function (D...		Potri.007G090300 [exp]	21.09	0.7295
AT5G18260			RING/U-box superfamily protein...		Potri.019G032300 [exp]	22.64	0.7193
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.004G030600 [exp]	28.03	0.7338
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.007G002200 [exp]	31.74	0.7241
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	38.66	0.6371
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	40.21	0.6763

Compare expression of checked genes

Potri.005G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.