Plant FIBer expression Database

Potri.005G130800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37210 342 / 5e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G034200
[exp]
589 / 0 AT4G37210 365 / 3e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.002G130800
[exp]
66 / 1e-11 AT4G37210 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.001G030401
[exp]
42 / 0.0007 AT4G37210 64 / 4e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000740
[exp]
400 / 2e-135 AT4G37210 418 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10019658
[exp]
341 / 6e-114 AT4G37210 328 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13424 TPR_12 Tetratricopeptide repeat
Representative CDS sequence
>Potri.005G130800.3 pacid=42802845 polypeptide=Potri.005G130800.3.p locus=Potri.005G130800 ID=Potri.005G130800.3.v4.1 annot-version=v4.1
ATGGCTTCGGAATCCTCAGTAACCGAACCGAAAACTGCCCCCAAAGAAAACCAAACCTCTGTTGAAGCCACCATCAAAGGATCCACCACCACCTCCTCTC
AAGGCGGAGCCGCCGACTCCACCTGCAACGACGACAACAATGGAGAGACTTCAGACCCTCGCAAGTCTCTAGATTTCGCTGTTGAGTTATCAGAGAAAGG
AACTAACGCGCTTAAAGAAAATGACTTCAGTGAAGCCGTAGAATGCTTTAGCCGTGCCCTTGAAATCAGGGTTTTGCATCATGGTGAGCTGGCACTTGAA
TGTGTGAATGCATACTATCTATATGGACGTGCACTGTTGTATAAAGCGCAGGAGGAGGCTGATCCGTTGGCTATGGTACCAAAGAAGGATAGTGAATCTA
AACAAGATGATAATAAAGATGGAGCTTCTAGGAATTTTGTAAATGGAGAATTTTCCTCTGCTTCTGTTTCTAGTAATGTTGAAGAGGGTAGGGGTTCTAA
TCATCCTGAAGGTGCAGCTGGTGGCGCTTCTAGTGGGAAGGAAAAAGAAGAAGAAGAAGAAGATGATGATGAGGGAAGTGACGATGAGGATCTTGCTGAA
GCAGATGAAGAAGAGTCTGACCTTGATTTGGCATGGAAAATGCTAGATGTTGCCAGAGCAATTGCTGAAAAACACCTCGATGACACGATGGATAAAGTTG
ACATTCTATCAGCACTGGCAGAAGTTGCATTGGAAAGAGAGGATATAGAAACATCTCTCAGCGACTACCAGAAAGCGCTATCCATTTTAGAAAGGCTTGT
TGAACCAGACAGTAGACATTTAGCAGAACTAAATTTTCGAATATGTTTGTGTCTGGAGATTGGGTCTAAGCCTCAGGAAGCAATACCTTATTGCCAGGAG
GCTATATCAGTTTGTAAGGCACGGTTGCAGCGGCTCATCAAAGAAGTAAAGAGTTCCACAGAATCAGCAACATCGTCAGCTGTTTCTGAATTAGATGAGG
GTGTCCAGCAGTCGTCCAATGTGCAGGCTGATAAATCTGTGACAGATAAAGAAGCAGAGATTGAAACACTTTCTGGCCTGTCTGCAGAGCTGGAAAAGAA
GCTTGAAGATCTACAACAGCTGGTCCTGAACCCAAAGTCCATTCTTGCAGAAATCCTTGGAATGGTATCTGACAAGGCAAAAGGTGGCGAGAAGAGTGCA
TCTCCAAATCTCACGAGCTCTTCTCAGTTGGTTGTTGCTAATAGCAGTGGAAGTTTTGACTCTCCAACCATTTCCTCTGCTCACACAAATGGGGTGTTGG
GAGTCACAGACCTTGGTGTTGCGGGAAGAGGAGTTAAGCGAGTTTTGACGAGTACAGGTTCGGTAGGATCATCAAGCGCAGTGAAGAAACCCACTCCAGA
TCCCTCATCAGACAAAGGGGATGGAAAAACCTGTTAG
AA sequence
>Potri.005G130800.3 pacid=42802845 polypeptide=Potri.005G130800.3.p locus=Potri.005G130800 ID=Potri.005G130800.3.v4.1 annot-version=v4.1
MASESSVTEPKTAPKENQTSVEATIKGSTTTSSQGGAADSTCNDDNNGETSDPRKSLDFAVELSEKGTNALKENDFSEAVECFSRALEIRVLHHGELALE
CVNAYYLYGRALLYKAQEEADPLAMVPKKDSESKQDDNKDGASRNFVNGEFSSASVSSNVEEGRGSNHPEGAAGGASSGKEKEEEEEDDDEGSDDEDLAE
ADEEESDLDLAWKMLDVARAIAEKHLDDTMDKVDILSALAEVALEREDIETSLSDYQKALSILERLVEPDSRHLAELNFRICLCLEIGSKPQEAIPYCQE
AISVCKARLQRLIKEVKSSTESATSSAVSELDEGVQQSSNVQADKSVTDKEAEIETLSGLSAELEKKLEDLQQLVLNPKSILAEILGMVSDKAKGGEKSA
SPNLTSSSQLVVANSSGSFDSPTISSAHTNGVLGVTDLGVAGRGVKRVLTSTGSVGSSSAVKKPTPDPSSDKGDGKTC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.005G130800
[exp]
0 1
AT1G16180 Serinc-domain containing serin... Potri.001G038100
[exp]
1.00 0.9065
AT3G20870 ZTP29 zinc transporter 29, ZIP metal... Potri.001G018800
[exp]
3.46 0.8761
AT5G54110 ATMAMI membrane-associated mannitol-i... Potri.001G408200
[exp]
4.24 0.8920
AT5G14170 CHC1 SWIB/MDM2 domain superfamily p... Potri.012G096700
[exp]
4.24 0.8830
AT5G19830 Peptidyl-tRNA hydrolase family... Potri.001G005000
[exp]
6.48 0.8539
AT4G38630 ATMCB1, MBP1, A... MULTIUBIQUITIN-CHAIN-BINDING P... Potri.007G056200
[exp]
6.78 0.8534
AT3G17830 Molecular chaperone Hsp40/DnaJ... Potri.015G035300
[exp]
7.00 0.8691
AT1G76900 TUB AtTLP1 tubby like protein 1 (.1.2) Potri.005G192300
[exp]
7.07 0.8507
AT5G15080 Protein kinase superfamily pro... Potri.010G033800
[exp]
7.21 0.8778
AT4G29820 CFIM-25, ATCFIM... ARABIDOPSIS THALIANA HOMOLOG O... Potri.006G146400
[exp]
8.24 0.8575

Potri.005G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.