Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 773 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 588 / 0 Protein kinase superfamily protein (.1) AT1G25390 289 / 3e-88 Protein kinase superfamily protein (.1) AT3G53840 284 / 3e-86 Protein kinase superfamily protein (.1) AT1G18390 281 / 8e-85 Protein kinase superfamily protein (.1.2) AT1G69730 281 / 1e-83 Wall-associated kinase family protein (.1) AT5G38210 276 / 9e-83 Protein kinase family protein (.1) AT5G02070 273 / 4e-82 Protein kinase family protein (.1) AT1G66880 278 / 3e-80 Protein kinase superfamily protein (.1) AT1G16130 261 / 1e-76 WAKL2 wall associated kinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034500 [exp] 1050 / 0 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 670 / 0 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 662 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G059900 [exp] 300 / 2e-92 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G118500 [exp] 294 / 5e-90 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.010G121100 [exp] 291 / 6e-89 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 293 / 7e-89 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 291 / 1e-88 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G096550 [exp] 290 / 5e-88 AT5G38210 594 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000741 [exp] 795 / 0 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 613 / 0 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 556 / 0 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011652 [exp] 352 / 2e-116 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 284 / 1e-85 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 282 / 1e-85 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10016737 [exp] 281 / 2e-84 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 273 / 4e-82 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036691 [exp] 261 / 2e-77 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10008105 [exp] 254 / 1e-74 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G130900.4 pacid=42805241 polypeptide=Potri.005G130900.4.p locus=Potri.005G130900 ID=Potri.005G130900.4.v4.1 annot-version=v4.1 ATGAGTCTTCGACAGGAAAGTTTGCTTCTTTTCATCACCTTCATCACGATTTTTATTGCTACCACAAGTCCTACAACTAAAGCTCAGAAGTCCGGCAGCA ATTGTGCCTCTTCATGTGGGATTGGGAAATCAGCAAGAGTTGTCCCGTACCCTTTTGGTTTCTCAAATGGATGCCCCATCCAGTTAAACTGCGAATCAAC TGAAGGTGAGATCAAGATTGGTGAATTTCAAGTCCAGAACATAACCCCAAATGGTATCTTGGTCAATCTTCCAGCAGACTGTAATCGTTCTATTGAAACA ATCAGACCGCTTTTTGGTCTGAACTATGGTCCTTCTTGGCAAAACAGTTTGTTACTTCAAAACTGTAGCAAGCCTTCAAATAGTTGTGTTATTTCAAGAA GTCCGTTTCAGGGAGAGTTGCATTCGAAAAACTGTGAGGCTGCTAAAAATGACAACTTGAGTTGTTACTCACTACCGTACTCAGGTATTGATACTTTGAG TTATGAAGGTGTGAATTCAACTCAGTGTAGTTCTGTTTTCTCTTCTCTTGCTCTTGGGTCGGACAGTCCGGTTGTCTCTTTCCAGTATGAAAGAATTGAA TTGGAATGGTGGCTTGAAGGTCATTGTCGGGATACTTTTTGCTCAAAGAACGCGAATTGTAGCGAGGTTAAGCTCCAGAATGGGACTGTTGGATTCAGAT GTCATTGCTATGACGGGTTCGCTGGAGATGGGTTTACCACCGGGAATGGCTGCCGGAGAGTTTCCAAGTGCAGTGCTTCAAGGTACATGTCTGGCCACTG TGGAGGAACTACTAGAGTAGTTGTTCTTCTTGGAGGGCTTATTGCTGGAGCTTCATTGATGGCTGTTTTCGCCCTTCTCTGTTACTTTGTCAAGAAGAAA TCCACTTCAATGCGAAATCGGTCAAGTGCAAAGCGCCTTCTATGTGAAGCTGCAGGCAACTCTAGTGTTCCATTTTTCCAATATAAAGAAATTGAAAGGG CCACTAATGGCTTCTCAGAGAAACAAAGGCTAGGAACTGGAGCCTATGGTACAGTTTATTCAGGAAAACTCCACAATGATGATTTGGTTGCAATAAAAAA GATCAAACAGAGAGATACTGACAGCCTTGATCTAGTCATGAATGAAATAAAGCTCCTTTCATCCGTAAGCCATCCAAATCTGGTTCGTCTTTTAGGCTGT TGCCTAGAGGAGGGAGAACCAATCCTAGTCTATGAATTTATGCCTAATGGAACTTTGTGTCAGCACCTACAACGAGAGAGGGGCAATGGGCTTCCGTGGA CTGTTAGGCTTACCGTTGCTGCTGAAACTGCTAATGCCATTGCGTATCTCCATTCAGTCGTGAATCCACCAATTTACCACCGAGACATAAAATCTAGCAA CATACTATTGGATTACAACTATAGATCAAAGGTAGCTGATTTTGGTCTTTCCAGACTTGGCATGGAAGAATCATCTCATATATCAACCGCCCCGCAAGGA ACTCCAGGCTATCTTGATCCTCAATATCATCAATATTTCCATCTTTCTGATAAAAGTGATGTTTACAGTTTTGGGGTAGTTCTCGTAGAGATCATAACTG CACAGAAAGTAGTTGATTTTTCTCGCCCACACAGTGAGGTTAATTTGGCTGCACTTGCCATTGATAGGATTGGAAGAGGTTGTGTGGATGAGATAGTAGA TCCATATCTTGACCCGGATAGAGATGCCTGGACCTTATCATCAATTCATAGCGTGGCTGAACTTGCGTTTAGATGCCTTGCTTTTCATAGGGATATGAGG CCTACTATGATGGAAGTTGCAGAAGAGCTTGAACAGATTAGGCTTAGTGCATGGGTCCCCACCATGCACATGGCATCACCGTCATCTTCCTCTCATTTCT CGGACCATGGAAGTCAGAAATCACTGGGTGTCTCTGTTGGTAAAAAGGCAGCAGTAGCTAGTCGGAGATTACTTGTTCCACAGAGAACAGATAGTCTGAC TTCTTTGGAAGAGGTGAAGGATAGCTCTCCAGTTTCTGTGCAGGATCCTTGGTTGAGTGAACAGAGCTCACCATCAACAAACAGCCTGTTGGATAATGTA GTTCATTGA
AA sequence Show only first row Show all	>Potri.005G130900.4 pacid=42805241 polypeptide=Potri.005G130900.4.p locus=Potri.005G130900 ID=Potri.005G130900.4.v4.1 annot-version=v4.1 MSLRQESLLLFITFITIFIATTSPTTKAQKSGSNCASSCGIGKSARVVPYPFGFSNGCPIQLNCESTEGEIKIGEFQVQNITPNGILVNLPADCNRSIET IRPLFGLNYGPSWQNSLLLQNCSKPSNSCVISRSPFQGELHSKNCEAAKNDNLSCYSLPYSGIDTLSYEGVNSTQCSSVFSSLALGSDSPVVSFQYERIE LEWWLEGHCRDTFCSKNANCSEVKLQNGTVGFRCHCYDGFAGDGFTTGNGCRRVSKCSASRYMSGHCGGTTRVVVLLGGLIAGASLMAVFALLCYFVKKK STSMRNRSSAKRLLCEAAGNSSVPFFQYKEIERATNGFSEKQRLGTGAYGTVYSGKLHNDDLVAIKKIKQRDTDSLDLVMNEIKLLSSVSHPNLVRLLGC CLEEGEPILVYEFMPNGTLCQHLQRERGNGLPWTVRLTVAAETANAIAYLHSVVNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMEESSHISTAPQG TPGYLDPQYHQYFHLSDKSDVYSFGVVLVEIITAQKVVDFSRPHSEVNLAALAIDRIGRGCVDEIVDPYLDPDRDAWTLSSIHSVAELAFRCLAFHRDMR PTMMEVAEELEQIRLSAWVPTMHMASPSSSSHFSDHGSQKSLGVSVGKKAAVASRRLLVPQRTDSLTSLEEVKDSSPVSVQDPWLSEQSSPSTNSLLDNV VH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23450			Protein kinase superfamily pro...		Potri.005G130900 [exp]	0	1
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	1.41	0.8482
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	2.44	0.8293
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192300 [exp]	4.00	0.8339
AT5G20950			Glycosyl hydrolase family prot...		Potri.019G037400 [exp]	7.21	0.8217
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.003G147900 [exp]	8.12	0.7820
					Potri.006G088700 [exp]	10.00	0.8190
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	10.58	0.8083
					Potri.006G088664 [exp]	10.95	0.7949
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	13.78	0.7997
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	18.73	0.8048	Pt-TAN1.2

Compare expression of checked genes

Potri.005G130900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.