Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XLG.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23460 1082 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 693 / 0 XLG2 extra-large GTP-binding protein 2 (.1) AT1G31930 691 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G26300 152 / 5e-40 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 69 / 1e-11 Protein of unknown function (DUF3133) (.1) AT3G61670 64 / 3e-10 Protein of unknown function (DUF3133) (.1) AT4G01090 61 / 5e-09 Protein of unknown function (DUF3133) (.1) AT1G01440 60 / 5e-09 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035200 [exp] 1523 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 814 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 809 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.015G031100 [exp] 723 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 719 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.001G135300 [exp] 712 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 708 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.006G219500 [exp] 152 / 1e-39 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 140 / 1e-35 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019655 [exp] 1140 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 1052 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 817 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 797 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10010421 [exp] 689 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 678 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10004784 [exp] 145 / 6e-37 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10003115 [exp] 144 / 8e-37 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10001910 [exp] 68 / 3e-11 AT1G01440 275 / 5e-82 Protein of unknown function (DUF3133) (.1) Lus10005153 [exp] 65 / 2e-10 AT2G46380 503 / 3e-166 Protein of unknown function (DUF3133) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00503 [poplar] [flax] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Potri.005G131200.1 pacid=42802370 polypeptide=Potri.005G131200.1.p locus=Potri.005G131200 ID=Potri.005G131200.1.v4.1 annot-version=v4.1 ATGTGTTCAGTTACTGAAGATGGAGTTCAATGCTCATTTGCACTTGAATACACCGGACCCCCGGTGGGCTACGACATCCCACGCGCCGTCCCAATCAACG TCAACAACATCCCTGTGGCCGCCGTAGTTCCCCACATTAATTTCCAACAAAATATCACTTTACCTGTAGTAAAACCTCTGTTACCCGCCTCTGATCCCAG AAAAAACCCAAAATCTGTTAATACCGGTAAAAACCCAGGTAAGGATTGTGGATCTGAAGAGGCAGCTATAACTGTATCACCAACTTCCGTTATAGAGAGA GCTGTAGATCATAATTTGCAAGAATGTGTTTTTTCTAGCGAGTTAAGTAGTTCAGGTTTATCAAATGATGCTGGTACAAGTTCAAGTACTAATAGTTTTG ATGATAAATCGCGTGATGAAAGTTTGCTAAAGTTGAGGGTTTCTAATGAATTGTCTTCGAATCGAGATTGGGAGTCAAATGAATCTGTTTTAAGTAGTGT TGATGTTGATGATGAGTACCCGTCTTCGCGTGTTTCTAGTGTTAAAGTTTCAAATAATGAGGTGAATGGTGAGGGTAGAAAAGCCCCAGTTGTTACTTTT CGCGATATTGAATCGAATGATGATGGTGGTGATGGTGATATTGATGATGGGTTTGGTGGCAACGAGGGGTTTTTCGAGGAGGAGGAGAGGGTTCTAAGGA TTAAACCAGAGGCCAGAAGTAAAGGGAAGAAAGGGAGTTGTTATAGGTGTTTTAAAGGGAGTAGGTTCACGGAGAAGGAAGTTTGTCTTGTTTGCGATGC GAAGTATTGTATCAATTGTGTGCTTAGAGCGATGGGATCGATGCCAGAAGGGAGAAAGTGTGTTACTTGTATTGGATTTCCAATTGATGAATCAAAGCGT GGGAGTTTAGGGAAGTGTTCGAGGATGCTCAAGAGGCTGTTGAATAATTTGGAGGTTAGACAGATAATGAAGGCAGAGGAGTTGTGCGAGGCAAATCAGT TGCCTCCGGAGTATGTTTATGTGAATGGAGAACCTCTTTGTCATGAGGAGTTAGTTGTTTTGCAGACTTGTTCGAACCCGCCTAAGAAAATGAAACCTGG AAACTATTGGTATGATAAAGTGTCCGGTCTTTGGGGAAAGGTAGGGCAAAAGCCTTGCCAGATTATAAGTCCTCATTTGAATGTTGGGGGTCCAATTAAG GCAAATGCTAGCAATGGAAACACACAGGTTTTCATGAATGGCCGGGAGATCACAAAAGTTGAGCTTAGGATGTTGCAGCTGGCAGGAGTTCAATGCGCTG GCAACCCACATTTTTGGGTGAATGAGGATGGATCATACCAAGAAGAGGGACAGAAGAACACTAAAGGTTACATTTGGGGCAAGGCGGGAATGAAACTTGT TTGTGCTTTCTTATCACTACCTGTTCCTTCAAAACCTTCGAATTCTTGTGGAGAGCAAGTTAACAGTCTGATTAGCAGAAGCATCCCAGACTACCTTGAG CAGAGAACACTTCTGAAGCTTCTTTTAGTTGGATTTAGTGGCTCTGGAACAAGTACTATCTTTAAGCAGGCAAAGATTCTTTATAAACCTGTCCCTTTCA CTGAAGATGAGCGTGAAAACATTAAATTGACAATCCAGAGTAATGTGTATGGTTATCTTGGTATACTTCTTGAGGGCCGTGATCGATTTGAAGAGGAAAG TTTAACTGCAGTGACAAAAGAGCAATCTACTGATGAAACAGAACATATTGGGAGTACAAGTAACACCAACCACCAAACTATCTACTCAATTGGTCCAAGG CTTAAAGCATTCTCGGATTGGCTTCTGAAGACTATGGTTTCTGGGAATTTAGAAGCAATTTTTCCTGCTGCTACTCGCGAATATGCACCACTAGTTGAAG AGTTGTTGAAGGATGAAGCCATTCAGGCCACTTATAAGCGGAGAAATGAGTTGGAAATGCTACCTAGTGTGTCAAGTTATTTCTTGGAGCGGGCTGTTCA TATATTGAGAACAGACTATGAGCCCTCAGATTTGGATATCCTATACGCTGAGGGTGTTACTTCATCAAATGGGCTTGCTTGCTTGGATTTCTCATATCCC CAATCAGCATCTGATGATAATTATGACACTGAAGACCAGCATGATGCTTTGCTTAGGTACCAACTAATTAGTGTACATTCACGGGGGCTTGGAGAGAACT GCAAGTGGCTAGAGATGTTTGAAGATGTTGGGATGGTTATTTTCTGTGTTGCCATGAATGACTATGATCAGTATACAGTTGATGGGAATGGCTTGTCTAC TAACAAGATGTTGCTGAGCAGGAAATTCTTTGAGAGCATTGTTACTCATCCAACATTTGAGCAGATGGATTTTCTTTTGATACTAAATAAATTTGATCTG TTTGAGGAGAAAATTGAGCGAGTACCGTTGACTCAATGTGAATGGTTTGATGATTTCCATCCAGTGATCAGTAGCCATCGCTCCAACAGCAACAGCAACA GCAACAGCATTAATACTAGCCCCTCACTTGGTCATCTGGGTGCCCACTATATGGCAGTCAAGTTCAAGAGGCTTTACGCCCTACTCACCGGAAGGAAGTT GTATGCTTCTGTGGTCAAGGGACTCGAACCTGATAGTGTTGACGCGGCTCTTAAATATGCGAGGGAGATTATGAAGTGGGATGAAGAAAAACCCAACTTC AGTCTCAGTGAGTATTCATTGTATAGCACCGAGGCAAGCTCCTATTCCCCCTGA
AA sequence Show only first row Show all	>Potri.005G131200.1 pacid=42802370 polypeptide=Potri.005G131200.1.p locus=Potri.005G131200 ID=Potri.005G131200.1.v4.1 annot-version=v4.1 MCSVTEDGVQCSFALEYTGPPVGYDIPRAVPINVNNIPVAAVVPHINFQQNITLPVVKPLLPASDPRKNPKSVNTGKNPGKDCGSEEAAITVSPTSVIER AVDHNLQECVFSSELSSSGLSNDAGTSSSTNSFDDKSRDESLLKLRVSNELSSNRDWESNESVLSSVDVDDEYPSSRVSSVKVSNNEVNGEGRKAPVVTF RDIESNDDGGDGDIDDGFGGNEGFFEEEERVLRIKPEARSKGKKGSCYRCFKGSRFTEKEVCLVCDAKYCINCVLRAMGSMPEGRKCVTCIGFPIDESKR GSLGKCSRMLKRLLNNLEVRQIMKAEELCEANQLPPEYVYVNGEPLCHEELVVLQTCSNPPKKMKPGNYWYDKVSGLWGKVGQKPCQIISPHLNVGGPIK ANASNGNTQVFMNGREITKVELRMLQLAGVQCAGNPHFWVNEDGSYQEEGQKNTKGYIWGKAGMKLVCAFLSLPVPSKPSNSCGEQVNSLISRSIPDYLE QRTLLKLLLVGFSGSGTSTIFKQAKILYKPVPFTEDERENIKLTIQSNVYGYLGILLEGRDRFEEESLTAVTKEQSTDETEHIGSTSNTNHQTIYSIGPR LKAFSDWLLKTMVSGNLEAIFPAATREYAPLVEELLKDEAIQATYKRRNELEMLPSVSSYFLERAVHILRTDYEPSDLDILYAEGVTSSNGLACLDFSYP QSASDDNYDTEDQHDALLRYQLISVHSRGLGENCKWLEMFEDVGMVIFCVAMNDYDQYTVDGNGLSTNKMLLSRKFFESIVTHPTFEQMDFLLILNKFDL FEEKIERVPLTQCEWFDDFHPVISSHRSNSNSNSNSINTSPSLGHLGAHYMAVKFKRLYALLTGRKLYASVVKGLEPDSVDAALKYAREIMKWDEEKPNF SLSEYSLYSTEASSYSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	0	1	XLG.1
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	1.00	0.8184
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	4.69	0.8158
AT2G39750			S-adenosyl-L-methionine-depend...		Potri.010G199300 [exp]	7.74	0.7083
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	9.59	0.7676
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	9.89	0.7575
AT5G53930			unknown protein		Potri.011G115900 [exp]	12.00	0.7688
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	12.84	0.7662
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	12.96	0.7180
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.012G071900 [exp]	13.49	0.7137
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	13.56	0.7471

Compare expression of checked genes

Potri.005G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.