Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60150 107 / 6e-23 unknown protein AT3G53320 56 / 1e-07 unknown protein AT2G37070 53 / 2e-06 unknown protein AT2G38890 44 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G044500 [exp] 58 / 5e-08 AT2G38890 107 / 1e-25 unknown protein Potri.016G085600 [exp] 58 / 5e-08 AT3G53320 174 / 4e-46 unknown protein Potri.010G217000 [exp] 57 / 9e-08 AT2G38890 92 / 2e-20 unknown protein Potri.006G131650 [exp] 57 / 1e-07 AT3G53320 146 / 1e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023170 [exp] 56 / 2e-07 AT3G53320 133 / 1e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G131500.13 pacid=42803177 polypeptide=Potri.005G131500.13.p locus=Potri.005G131500 ID=Potri.005G131500.13.v4.1 annot-version=v4.1 ATGAAGTGCAATGGGCAAGATACTTGTAAATCAAGCTCCTCATCATGTATGGATGTTATGATTGACGAGGAAAGTGTTACCATGGACAAACTACATGTGC CCAAACTTAATCTTGAGCCACAGCAGATGAAGCGAAAGAAATACAATCTGCGGAAAAGCTTAGCATGGGACAAAGCTTTTTTCACTGAAGAAGGTGTTTT AGATCCATTAGAATTATCAACACTCAGTACGAGAGTTGACAGGCCTGTGTCCCGTGGAGGGAGAGAGTTACTATCCGGTGGTTTGGACTGCATCAATGAG TTACCAGATATGCAAGCACTTGAAGATAATTTGTTCAAGGAATTGCCTCCAAACACTCTTGCCGATGGAGGCATGGCTGCTCGTGTCTTCTCTCCAAAGC CTGTTTCATTAGCAAGAGATGAAGCTGGCCCAGCTTCTGTGGCCAAGCGAAAAATTCTTTCAGCCTCTAATATTAGTCAAAGTGCATCCAAACGCAGTGG TTGCCCGCGACCGGTGGCATCATCTTCTCTTAGAAGGCCTCCCACTACAAACAAAACTAAAGCGACAACAAAAGACTCAAAAGTTTCAAAACTATTAGCT CCAAAGCCAGATCCCTCGAATGTTTATGCTGCTCCTAGATCCAGCCACTTGAAACGTAATCAGATTCCTCATCCAGTAGGTGATGGTCAGAAGAATATTA GATCAAAGGGCACTTCAACTAATACCAGAAGTGTTCGAAAAGACATGGAGCTTGGTCCTTCTGACAAACTGTTGCCAAAATCCACTGCTCATCATGCTAG AAGTAAGGTCAGCCCGGTGCCAAAAAAACATTCATCAACAAATACACAGCACCCCCAGGTTAACCTAGCAAATAATTGCTCAGAAGTGATCCCAGATCTT GTACGTCCAGTTGCTGCACATCCACTAAATGGCTCTGATAATAGTACCAGCAAAATTGCAGTTTCTTTCTCGCAAAATGCTTCCTGCAACAGTGAAAACA TGCAATGTACAGAGTCTCAAACAGCAAAAGCATCAGGCTTGCGGATGCCATCGCCATCACTGGGATTTTTTAGTCAGTCGAAACCTGCTGGTTCGCTTAG CCTCCTAGAAAGAACTCAAACTAGCAAACTTCGCGAGTCTAACATTCCTAGTTTGCACAAAGCTGCCCTCTCAAATCATCAGTGTCCCTGGCAACCATCC AATAAAACATCTGCATCCTTGAATATGAGGAGCAATGCTGCTGCTTCTGTCAATCCTACTTCACAGGGAAAGATCAAAGGCAATTCAGAATTAAAAAATA AAGAGAAGATGTTTCAGGCACCGCTTAACTCTAGGATTTGTGATGGGCTAGGTAATCAGCAGCAGTTGCACGACATTCATGACAATCAGTTGCTCTTGCA AGGTGGCCCTTGTGAACAACTGAAGAAAGGTCAACATAGCAAGAAAGTCACTGAGCTTTGCCTCACAGGTAGAGATACGACTGCGGCTGGATTAGACTAC CCCCATTCTAGATTCAATGTTAGCCTTGCAGCAGAAGTTGATAGTCTTTCAGAGAAAAATTGTGTGACTGCCAATCATCACATTGAAGACAGACAATACA TTCCTATCATCAAGGATAACAGTGACCATTCAGATTTTCCATCTCTAGGTATGAGTACTAATAGTGATGAGGGTACCCAAAAAGTGCACGATCAGTTAGC CAGGATGCAGGGAGTCAATGACCAGACTGTGAAACAATCTGAGCCAATGAAGCTTGACACCTGTCATGTTTATCTTGTTTCTAATGCAGAGAGTTTGAGC CTATGCTTGAACAATGGTACTTCAATTGAGGAGAGATCAGCTGAAGAGCTTAACAACTGTCGTGGTTCAAATCGTGCAAATGCAGTTCTTAAATCCCAAG ACTGTAGTACAGCTGAACTGGAAATTCCTTATAGGCCATCTTGCTGTAATGATATACTGTACACAAACAATGAATCTAGTGAAAGTGGAAACTTGTATAC GGAATTGTATGTGGAAAATGTGCAGCTGCAGTCTGTAGATGGTAATCTAACAGTCAAAAGGGACGAGAAAAGTATGCCAAACACTTTGCCGGAGTATAAT CTGCCGTCGATGAGTATTAGTGATCCAAGTGAAAAAACTGCCAAACAGACAGAGCTTCCATTTCCATGCCTTGTTACAGAACAAGCTATGGCAGATGATT GTGGATTGCAACATGATGGTTACTTATTGCATGGAAAAAGATTCTTCTCTGAAGAATCCAAGGAGAAGAATCTCCTTCAAAGTGCTGAAGATATGGTATC AAATGTTAATGCTTCTGGAGGTATATTGGAAAGTTCCGGAGTTCTTAGTTCAAAATCACCTGCCAAGCAAGATTCTAGTTCTAATGCAGCTGGAAAGTCA GAGTGCTTGCATGTGGAAAACCCTTTGGTATCTTCTGTAGACAAAGGGCTAGTTAAGGTTGCTTCTGAGATAACTGATATGAGTGGGGACAAAAGTTTAG TAAGTAAATGTGATTCTTCGGTTAAAAAATTCATTGTTTCCTCTTATTTACAGCGAGGAAATGATGCCAATGGAAGGGGTTCTTCCATTCCAGAGAATAA TTGCTCCACTTGTATGCATGATGTGAACGAAGACATGGAGAAAACTAAGGTGATAACTTCTTTCTGTGAATCTGATCAGGACAATCAGAGTCAAAGAGCA TTTGATATGTTGTATTCTAAGAGCCGATCTCTTGAAGAACAAAGGGAATGCAGTAATAGAGACATTGCAAATGTCAGAGGAACTATTGCAAGTGAAGTGG AAAGTCTAAATGGTATTCACCAATGTGAAATAATGGAACAAACAAATGAACTTGCTCAAGTTAATAGAATTACAAAGGAAACAGTAATGCAAAATGCATA CGTGCAGTCCTCAGAAGAAAGTCTGTTATCTGATAGCCACAATTGTAACATTAGTCCTTTGGTATCAAATAAAACTTCTACAGTAATGGTTGATGACATT CGAGAACTTGAAGAACATCTAGCAGTTCAAAATCCTTACGTGATGATTGAGCAAGCTCCCCTGGACAATCATGAATTTTGTTCGGATGATAGCCTGTTGC TCATGAATAATACTTCTGTAGAACTGCGAAAAGGAGATGCTCTTCAAAATGTTCTGGGTGTTGGTTTAGAACAGGGTGATGGCTCGTGTGAATCAAGATG TTTTGATGTCGACACTCAAGTACGTCCTATTAAAAATGCTGGTTCAGATTTGGATAAAAAAGCTGAGCACACATTTATGGTTAATACAGAGCCAGGTTTC ATGGAGATTCTGCCATCAATTGAAAACTACAAATGCAGTATGGATAGTAAGAATAGGAGCGATGATGAGCTGATTGATCAAGCTGCTTCCTTGGAATTTA ATTCATCTTCAGACAAGAGCAGGCATCAAATTGCATCATCAGTGGATGATTGTGACTCTAGTTTGTTTTGCTGTTTGAATGAGAAGTCTAAGTTATTAAT GAAAACAAAAGAGAAATCAAGTCAGAGAGTCCAGCAGGATGCTGAAGTTGATTTATCAGATAGGAATATTTTGCCAGAGGAAGCTCAGATTAAAGTTCCT CAGACCAGTAGCAGTCCCAGCATTGAAGTGCAGCATGAGTTGGATGTAATGTACCCCACGGAAGATAAGGCTGCAACATTGTCACTCCAGAAACCTGTTA AAAACAAGAAACAAGATGCTTGTGTTATAAAACCACCACCAAATGTGGTTCCTTTTTCCGATGAGTGGTTGGCGGCATTTGAAGCTGCTGGAGAGGAAAT TCTAACCATGAAAGGTGGTGCTGTACGAAATTCACCCCCTGACAAGGTTCAACATGAACCTGGTCCGTGGTCCCCGGTACGCCGGAAGAACGCTCAAGGG ATTGGGCCATTTGATTGTACAAAATTCATGAACAACAACACCCCACCTTCCACTTCTAATTGA
AA sequence Show only first row Show all	>Potri.005G131500.13 pacid=42803177 polypeptide=Potri.005G131500.13.p locus=Potri.005G131500 ID=Potri.005G131500.13.v4.1 annot-version=v4.1 MKCNGQDTCKSSSSSCMDVMIDEESVTMDKLHVPKLNLEPQQMKRKKYNLRKSLAWDKAFFTEEGVLDPLELSTLSTRVDRPVSRGGRELLSGGLDCINE LPDMQALEDNLFKELPPNTLADGGMAARVFSPKPVSLARDEAGPASVAKRKILSASNISQSASKRSGCPRPVASSSLRRPPTTNKTKATTKDSKVSKLLA PKPDPSNVYAAPRSSHLKRNQIPHPVGDGQKNIRSKGTSTNTRSVRKDMELGPSDKLLPKSTAHHARSKVSPVPKKHSSTNTQHPQVNLANNCSEVIPDL VRPVAAHPLNGSDNSTSKIAVSFSQNASCNSENMQCTESQTAKASGLRMPSPSLGFFSQSKPAGSLSLLERTQTSKLRESNIPSLHKAALSNHQCPWQPS NKTSASLNMRSNAAASVNPTSQGKIKGNSELKNKEKMFQAPLNSRICDGLGNQQQLHDIHDNQLLLQGGPCEQLKKGQHSKKVTELCLTGRDTTAAGLDY PHSRFNVSLAAEVDSLSEKNCVTANHHIEDRQYIPIIKDNSDHSDFPSLGMSTNSDEGTQKVHDQLARMQGVNDQTVKQSEPMKLDTCHVYLVSNAESLS LCLNNGTSIEERSAEELNNCRGSNRANAVLKSQDCSTAELEIPYRPSCCNDILYTNNESSESGNLYTELYVENVQLQSVDGNLTVKRDEKSMPNTLPEYN LPSMSISDPSEKTAKQTELPFPCLVTEQAMADDCGLQHDGYLLHGKRFFSEESKEKNLLQSAEDMVSNVNASGGILESSGVLSSKSPAKQDSSSNAAGKS ECLHVENPLVSSVDKGLVKVASEITDMSGDKSLVSKCDSSVKKFIVSSYLQRGNDANGRGSSIPENNCSTCMHDVNEDMEKTKVITSFCESDQDNQSQRA FDMLYSKSRSLEEQRECSNRDIANVRGTIASEVESLNGIHQCEIMEQTNELAQVNRITKETVMQNAYVQSSEESLLSDSHNCNISPLVSNKTSTVMVDDI RELEEHLAVQNPYVMIEQAPLDNHEFCSDDSLLLMNNTSVELRKGDALQNVLGVGLEQGDGSCESRCFDVDTQVRPIKNAGSDLDKKAEHTFMVNTEPGF MEILPSIENYKCSMDSKNRSDDELIDQAASLEFNSSSDKSRHQIASSVDDCDSSLFCCLNEKSKLLMKTKEKSSQRVQQDAEVDLSDRNILPEEAQIKVP QTSSSPSIEVQHELDVMYPTEDKAATLSLQKPVKNKKQDACVIKPPPNVVPFSDEWLAAFEAAGEEILTMKGGAVRNSPPDKVQHEPGPWSPVRRKNAQG IGPFDCTKFMNNNTPPSTSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60150			unknown protein		Potri.005G131500 [exp]	0	1
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	2.00	0.9174
AT5G60980			Nuclear transport factor 2 (NT...		Potri.017G094600 [exp]	2.44	0.8933
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Potri.001G247700 [exp]	4.00	0.8977	PCNA.2
AT4G16850			unknown protein		Potri.018G097900 [exp]	9.64	0.8993
AT3G54750			unknown protein		Potri.016G065600 [exp]	10.95	0.8925
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G130000 [exp]	11.31	0.9141
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	13.41	0.8945	Pt-SAH7.2
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.008G135100 [exp]	13.49	0.8882
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.009G073400 [exp]	15.09	0.8803	Pt-SIRANBP.2
AT1G64800			DNA binding;sequence-specific ...		Potri.016G001800 [exp]	17.23	0.8917

Compare expression of checked genes

Potri.005G131500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.