Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50410 126 / 3e-35 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT5G66940 122 / 4e-34 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 114 / 5e-31 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G21270 107 / 2e-28 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT5G65590 109 / 3e-28 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G47655 106 / 5e-28 DOF Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 105 / 2e-27 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G07640 105 / 4e-27 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G45610 104 / 6e-27 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 105 / 2e-26 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036400 [exp] 254 / 3e-85 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.014G036600 [exp] 121 / 3e-33 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G034200 [exp] 114 / 1e-30 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.007G038100 [exp] 112 / 5e-29 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.003G144500 [exp] 110 / 8e-29 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 110 / 1e-28 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G009300 [exp] 108 / 2e-28 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G100900 [exp] 108 / 2e-28 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.001G086400 [exp] 108 / 3e-28 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015425 [exp] 107 / 9e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10005956 [exp] 108 / 1e-27 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10010113 [exp] 108 / 2e-27 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10014001 [exp] 107 / 2e-27 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10029458 [exp] 107 / 2e-27 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10012619 [exp] 107 / 3e-27 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10016566 [exp] 106 / 6e-27 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10003207 [exp] 106 / 1e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10035504 [exp] 101 / 1e-26 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10042114 [exp] 100 / 1e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G131600.1 pacid=42803538 polypeptide=Potri.005G131600.1.p locus=Potri.005G131600 ID=Potri.005G131600.1.v4.1 annot-version=v4.1 ATGCCAACAGAGTTATCAAGCAGTGAAAAAACTAGGAGACCACCGCTATCGACAACACCAACATCAAATAAGCCTGGAGGGGCACCACCTCAAGAGCAAG AGCACTTGCCATGTCCACGTTGTGACTCAACAAACACTAAGTTTTGTTACTACAACAACTACAATTTCTCTCAGCCTCGTCACTTCTGTAAGTCTTGCCG CCGTTACTGGACTCACGGTGGCACTCTCCGAGACATCCCTGTTGGTGGTGGCACTCGGAAAAATGCTAAAAGGTCACGTACTTCAGCTACTACAGCTGCC TCCTTTGCGGGTCCTATTATCGACAACAACATTGATAACTTACCGTTGCCTGCTACCCCAGTGCTGGTTCCCCTCACAGCCAGTCAGGGTTTTTCGGTAC ATTTTGGTGGTGGCAGTGATGGGAAGGGCAACGGTGGTTGTGGTAGTGGTGCTCTGGGTGGGAGTTTTACTTCTTTGTTGAATACTCCAGGCCCAGCTGG GATCTTGGCTCTCGGAAGATTTGGACATGGACTTGGGCATGGGCTTGAAGATGTGGGGTGTGGGCTTGGAAGAGGGCTCTGGTCTTTTCCCGGAATAGGA GATAGTGGTGCTGGTGTAGGTGGTCATGGCGGGGTTACTGTCACAGCTGGATTGGACAACACATGGCAGTTTGGGAGTGCTGGGCAAAATGGTTTTGTTG GCGGGGATTGCTTTTCTTGGCCTGAGCTTGCAATTTCAACTCCTGCAAATGGTTTTAAATGA
AA sequence Show only first row Show all	>Potri.005G131600.1 pacid=42803538 polypeptide=Potri.005G131600.1.p locus=Potri.005G131600 ID=Potri.005G131600.1.v4.1 annot-version=v4.1 MPTELSSSEKTRRPPLSTTPTSNKPGGAPPQEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRSRTSATTAA SFAGPIIDNNIDNLPLPATPVLVPLTASQGFSVHFGGGSDGKGNGGCGSGALGGSFTSLLNTPGPAGILALGRFGHGLGHGLEDVGCGLGRGLWSFPGIG DSGAGVGGHGGVTVTAGLDNTWQFGSAGQNGFVGGDCFSWPELAISTPANGFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.005G131600 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.003G164000 [exp]	1.41	0.8525
AT2G30230			unknown protein		Potri.013G153100 [exp]	3.16	0.8254
AT1G55790			Domain of unknown function (DU...		Potri.011G141700 [exp]	3.87	0.8248
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	6.63	0.7948
AT2G26490			Transducin/WD40 repeat-like su...		Potri.014G038400 [exp]	10.19	0.7514
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	11.53	0.7644
AT1G16040			unknown protein		Potri.003G184701 [exp]	14.73	0.7165
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	18.49	0.7448
AT3G48880			RNI-like superfamily protein (...		Potri.016G019500 [exp]	20.97	0.7391
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	22.44	0.6885

Compare expression of checked genes

Potri.005G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.