Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50420 784 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 416 / 2e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 374 / 4e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 376 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 371 / 5e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13880 370 / 4e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 364 / 2e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 361 / 7e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 358 / 2e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03380 353 / 1e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 423 / 3e-135 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 410 / 2e-131 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 388 / 2e-124 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 388 / 2e-122 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 385 / 2e-122 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 379 / 6e-122 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G006800 [exp] 375 / 8e-121 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 379 / 3e-120 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 372 / 2e-118 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022469 [exp] 864 / 0 AT3G50420 720 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021232 [exp] 402 / 9e-131 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 397 / 2e-125 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 391 / 6e-124 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 387 / 1e-122 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 377 / 7e-121 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 374 / 2e-119 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 374 / 3e-118 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 372 / 9e-118 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 364 / 7e-115 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G131800.1 pacid=42805103 polypeptide=Potri.005G131800.1.p locus=Potri.005G131800 ID=Potri.005G131800.1.v4.1 annot-version=v4.1 ATGAACCCTCTTTCTTTAACGACACTGATACAAAAATGCACCACCATAACCTCTCTCAGAAAGGCTTATCAACTCCACGCTCTAATCCTCACAACCACGA TCTCAACAAGCTATGCACAATGTCCATATTTGAACAACAACATCCTCTCTATGTACGCGCGTTGCGGTTCTCTTTTCAACGCAAAGAAAGTGTTCGACAA AATGCCTCAAAGAAATATTGTTTCGTATAATGCATTAATTTCAGCTTTTTCTAGAGATTCTAATCATGGGTTCTTGAGTTTGAAGCTATTTGCGCTGATG GGCACTCAAGGTTTGACGCCTAATGGGTCAACTTTCTCGAGTTCACTTCAAGCTTGTTGTTTGCTTGAGGATTGGTTTATGGGGTCATTGATCCATGGTC AATCTGTTAAGCATGGGTTTTTTAATGATGTATTTGTTCAGACATCATTGCTTGGGATGTATTCGAATTGTGGGGATCTGGAATCTGCAAACAAAGTTTT TGGTTGTGTTGTACAGAAGGATGCTGTTTTGTGGAATTCCATGATATTTGGGAATTTGAAAAATGAGAAGTTAGAGGAAGGGGTTTTATTATTTGGTAAA TTGGTGAGGCATGGCATTGTTCCAACCGAGTTCACATACTCAATGATATTGAATGCTTGTGGTAAATTGGGAGATTGTAGGTGGGGACAAGTTATCCATG CACAAGTTATTGTTTTGAATGTACTAGCCGATTTGCCTTTGCAAAATGCGTTGCTTGACATGTATTGCAGTTGCGGTGACACCGAAACTGGATTTAATGT CTTTAATAAAATTGAGAACCCAGATTTAGTTTCTTGGAACTCAATGATTTCTGGATATGCGGAAAATGGAGAGGGAGCGGATGCTATGAATCTGTTCCTC CAGTTGGTAGGAGTGTTTCTTCCTAAACCGGATGAATATACTTTCGCTGCTGTTATTTCTGCTACTAGTGCATTTTCGGCAACTTGTTATGGGAAACCTC TTCATGCCCAGGTTTTGAAAGTGGGATCGGAGAGGAGTGTCTTCATAGGAACTACATTATTGTCAATGTATCTGAAAAATGGTGATATTGAATCCGCTGA ACAGGTTTTCAATATGATTGAAGGGAAGGATGTTGTTCTCTGGACTGAAATGATTATGGGTCATTCTAGATTGGGTGGTGGGGAAAGTGCAATAAAATTA TTCAGCATGATGTGTCATGAAGGCTACAAGATTGACAGTTTTGCTCTCAGCGGAGCTTTGAGTGCCTGTGCTGACCTCGCAACTTTAAACCAAGGAGAGA TGATTCATACTCAGACTGTAAAAAGAGGATGTGATGCTGAAATATCTGTTTGTGGAAGTCTTGTACATATGTATGCAAAAAATGGTGACCTTCATGCTGC TCGATCAATATTTTCCCAAGTTTCAAACCCTGATTTGAAGTGCTGGAACTCAATGCTTGGGGGCTATAGCCAACATGGAATGGCAGAGGAGGCGATGATA ATCTTTGCGAAGATTTTAGTCAATGGTCAAAGACCTGATCAAGTAACATTTTTGTCCCTGCTGTCCGCTTGCAGCCATAGTGGCTTGGTTGAAGAAGGAA AGCTCTTGTGGAGTCATATAAAGAAAAATGATGTTATACCTGGGCCTAAGCATTACGCTTGCATGGTTAGTTTATTAAGCCGAGCTGGATTGCTGGACGA GGCAGAAGAACTGATTATCAAATCAACTTACAGCAAAGATCATTTGGAATTATGGCGAACCTTGCTGAGCTCTTGTGTCAATAAAAGGAATTTGAAGATA GGAGTTCGCGCAGCTGAAGAAATATTACAATTAGAGCCAGAAGACAGTGCAACACACATTCTGCTTTCAAATCTTTATGCCGCTGCAGGGAGATGGGAGG CTGTTGCCGAAATGAGGAGAAAGATAAGTGGACTGATGATCGAAAAAGACCCTGGACTAAGCTGGATTGAAGGAAAAAAATGA
AA sequence Show only first row Show all	>Potri.005G131800.1 pacid=42805103 polypeptide=Potri.005G131800.1.p locus=Potri.005G131800 ID=Potri.005G131800.1.v4.1 annot-version=v4.1 MNPLSLTTLIQKCTTITSLRKAYQLHALILTTTISTSYAQCPYLNNNILSMYARCGSLFNAKKVFDKMPQRNIVSYNALISAFSRDSNHGFLSLKLFALM GTQGLTPNGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGDLESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGK LVRHGIVPTEFTYSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTETGFNVFNKIENPDLVSWNSMISGYAENGEGADAMNLFL QLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLGGGESAIKL FSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKRGCDAEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMI IFAKILVNGQRPDQVTFLSLLSACSHSGLVEEGKLLWSHIKKNDVIPGPKHYACMVSLLSRAGLLDEAEELIIKSTYSKDHLELWRTLLSSCVNKRNLKI GVRAAEEILQLEPEDSATHILLSNLYAAAGRWEAVAEMRRKISGLMIEKDPGLSWIEGKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	0	1
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	2.00	0.9275
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	3.74	0.9290
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	3.87	0.9258
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	5.00	0.9181
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	5.38	0.8906
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	6.63	0.9220
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	8.77	0.9171
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	8.94	0.9158
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	8.94	0.8831
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	9.05	0.8528

Compare expression of checked genes

Potri.005G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.