Plant FIBer expression Database

Potri.005G133500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50430 429 / 4e-142 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022468
[exp]
529 / 1e-179 AT3G50430 349 / 9e-111 unknown protein
Lus10016771
[exp]
137 / 4e-34 AT5G15940 202 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14694 LINES_N Lines N-terminus
PF14695 LINES_C Lines C-terminus
Representative CDS sequence
>Potri.005G133500.3 pacid=42803714 polypeptide=Potri.005G133500.3.p locus=Potri.005G133500 ID=Potri.005G133500.3.v4.1 annot-version=v4.1
ATGTCTCCTGATTCCAAGCTCTCTCTGCTCTGCCGTCTAGTCGACAACCTGCCGGAACCGGAAACAACAAAAACGAAGGAGAGGGATCTTCTAATTTCTC
TCTCTCAGATTTTGAAAGTAATTCAGACTTGGATTCGAGAACTTGATAAAGAGACTGAAAGTAAGAAGATATGTTATGGTGAGTCGGTGCTGCATCATGA
GGAGCACAGCTGTTTGATTAAGATAGTAACTGACTTGATGCTTCTTCTTACAGTTGAGAGTCAATATGTACAACATTCAGTGGGCAACGTTCTTGTAGTC
TTTTCTGAGTTTGTGGCTTTGTCTGGAAGTGGGTGGGATTCTTTTATTCATTCATTAAGCACTTGTCTTGAATTGGCGATTGCCAATGTGTTCTTGTGTT
CTTGGGAACCATCAAGAACTGAAGTTGAGGATTCAAATTGTGATTTTTCAAGTTATGAAGTCGTAAAATCTAGTTTGAAAGGTGGTGACTGGTCTACAGC
AGCAGGGATTGTTCGAGTTTTGAGAAATATATTGAAACATTTGAAGCAAGAGTGTGATGATCAACTTCTTGAAGTGTATTTGGGTTCTGTCAGTTCCTTT
CTTTCAAATGTGCCTTGGGAGTCCATGGATGAGATTCATGTTGATCAGAGTTGCGACGCTTGGGATGGTGATCCTCAGAATTGCTGTTCTAAGGATGCTT
CAGTTTTCAGAAGTTTTGGTGCAAAAGAGCCAAAAGTTCTGTTTCTAGGGATTTTTATTCAGTTCCTTTGCTCTTTGGTTGAGCAAAGTAGTGCTGTGGA
AACTGAGGTTGGTTCCCAAGTTCAGTATCCAGTTCTCTCCATGGTCATCAGTCTTGTTCCTAAACTTGCATGCTGGTGCCTTTGCAAGAAAGGGAAGAGT
GTGAAGCTGTCAGTCTCTCAATACTTTAGACACAAATTGTTGATGCTAATGCTGAGAATTAGTTACGTAACCTGTCTAGGTTGCTCTACTCTAATTTTAT
GGTTGCAACTTCTTCATGAGTACTTCGAAGAGCTTTTGCAGAAACCCATAAGCAAACTCGAGGCTGGTCAGGATGAATGTCTAGAAGGCTCTCCTTTTTT
GTTAGGTCTTTCTAATGGAGAACTTGATGGCATGCATTCCTTTCATTTGCAGAGGCAGACTCTGCTCCTTTTTCTAAGATGTTGCTTCAGTCTGATGAGT
TTCACAGGAGAGACAAGCAAGCAATGTGTGACTTCAAAGACAATTCTCAAGTCTTGCTTGACTGTTGCCTCAGTCTCAGATCTTGATTATTGTAGCAGAA
ATAAAGGTTTACTGGAGCTTTATAATTGGCTGCAAGGGCATCTTCCAGATGATATATTAGTTGATCATGAAAGGTATCTGGAAAAGTGCATGGGCTTTTC
CTTATCTTTCCTCCAGTTATATATGCATGAGGATGATGTATTATTTATGGTCCTTTTGCAACTGCTGAGTGTGCCTTTCTGTTCTGAGCAATGGTTAAAT
GGAGAAAAGCAGACATCTCAATATCTGAAAGATGCTACTCATCATGTCTCAAACCTCTTTAATCCTGTGCACCTTTTCCATCTATTCCTTGCTGAGTTGC
ATTATGACCACCAAGTGCTACTTGATTACCTTATTTCTAAAGATGTTGGAATCAGTTGTGCTGAATATCTTTTAAGGTGTTTGCGTATGGTACACAATTC
ATGGAACGTATTTGCCACATTTTCTATGGATTGGAAAGTTGTAAATCAATCATGTTGCAAGAAGAGAAGACTTCTGTTGGATGTCTCTGATTTTCAGGGA
GAGTTGTCATCTATACCTGAGCAATGCATTTCTCAATCACTTGAGGAAGAAGATGAGAAAGAGTTTGAATATACCTGTGAAAACCACCAAAACAAAAGAC
AGCCATTCAAGGAAGCCAAAGATTGTTTGATTTCCTTAAAAGCTTCTGTGGAAAGTCTTCATCGAAAGAATTTGTTTCCATATAATCCACTAGTGCTCCT
GAAACGTTTATCACAATTTCAGGAGCTATGCCATAGTTGA
AA sequence
>Potri.005G133500.3 pacid=42803714 polypeptide=Potri.005G133500.3.p locus=Potri.005G133500 ID=Potri.005G133500.3.v4.1 annot-version=v4.1
MSPDSKLSLLCRLVDNLPEPETTKTKERDLLISLSQILKVIQTWIRELDKETESKKICYGESVLHHEEHSCLIKIVTDLMLLLTVESQYVQHSVGNVLVV
FSEFVALSGSGWDSFIHSLSTCLELAIANVFLCSWEPSRTEVEDSNCDFSSYEVVKSSLKGGDWSTAAGIVRVLRNILKHLKQECDDQLLEVYLGSVSSF
LSNVPWESMDEIHVDQSCDAWDGDPQNCCSKDASVFRSFGAKEPKVLFLGIFIQFLCSLVEQSSAVETEVGSQVQYPVLSMVISLVPKLACWCLCKKGKS
VKLSVSQYFRHKLLMLMLRISYVTCLGCSTLILWLQLLHEYFEELLQKPISKLEAGQDECLEGSPFLLGLSNGELDGMHSFHLQRQTLLLFLRCCFSLMS
FTGETSKQCVTSKTILKSCLTVASVSDLDYCSRNKGLLELYNWLQGHLPDDILVDHERYLEKCMGFSLSFLQLYMHEDDVLFMVLLQLLSVPFCSEQWLN
GEKQTSQYLKDATHHVSNLFNPVHLFHLFLAELHYDHQVLLDYLISKDVGISCAEYLLRCLRMVHNSWNVFATFSMDWKVVNQSCCKKRRLLLDVSDFQG
ELSSIPEQCISQSLEEEDEKEFEYTCENHQNKRQPFKEAKDCLISLKASVESLHRKNLFPYNPLVLLKRLSQFQELCHS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50430 unknown protein Potri.005G133500
[exp]
0 1
AT2G28290 CHR3, SYD SPLAYED, CHROMATIN REMODELING ... Potri.010G019150
[exp]
4.89 0.8525
AT5G10940 ASG2 ALTERED SEED GERMINATION 2, tr... Potri.002G103132
[exp]
4.89 0.8079
AT3G49725 GTP-binding protein, HflX (.1) Potri.007G007700
[exp]
6.00 0.8513
AT4G35520 MLH3, ATMLH3 MUTL protein homolog 3 (.1) Potri.005G101900
[exp]
7.74 0.8569
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Potri.013G092100
[exp]
7.74 0.8238
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Potri.007G066400
[exp]
7.93 0.8427 Pt-ABA3.1
AT2G39580 unknown protein Potri.010G208200
[exp]
9.53 0.8302
AT1G05830 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithor... Potri.002G232800
[exp]
9.79 0.8313
AT2G27760 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (... Potri.009G147600
[exp]
10.00 0.8059
Potri.007G113550
[exp]
10.67 0.8163

Potri.005G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.