Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66880 599 / 0 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT4G33950 582 / 0 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT3G50500 574 / 0 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT1G10940 477 / 9e-170 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT1G60940 474 / 1e-168 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT5G08590 473 / 4e-168 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT5G63650 468 / 3e-166 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT1G78290 462 / 4e-164 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G40010 444 / 9e-157 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT2G23030 431 / 4e-152 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145500 [exp] 603 / 0 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.009G106900 [exp] 602 / 0 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.003G084100 [exp] 499 / 8e-179 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G218200 [exp] 486 / 5e-173 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.007G096400 [exp] 484 / 7e-173 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.002G099700 [exp] 482 / 7e-172 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.003G015400 [exp] 478 / 3e-170 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.005G162500 [exp] 476 / 1e-169 AT1G78290 511 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.004G138300 [exp] 474 / 1e-168 AT1G10940 577 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020997 [exp] 601 / 0 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10009332 [exp] 600 / 0 AT5G66880 610 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10019641 [exp] 565 / 0 AT5G66880 577 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10027931 [exp] 564 / 0 AT4G33950 603 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10023855 [exp] 499 / 2e-178 AT4G33950 531 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004382 [exp] 496 / 3e-177 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10012050 [exp] 495 / 3e-177 AT4G33950 553 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 493 / 3e-176 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10001367 [exp] 488 / 9e-174 AT1G60940 599 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10015464 [exp] 488 / 1e-173 AT1G60940 596 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G134400.1 pacid=42805576 polypeptide=Potri.005G134400.1.p locus=Potri.005G134400 ID=Potri.005G134400.1.v4.1 annot-version=v4.1 ATGGATAGATCGGCGATGACAGTAGGACCGGGAATGGACATGCCGATCATGCATGACAGTGACCGGTACGATTTAGTGAGAGATATCGGGTCGGGTAATT TCGGTGTAGCTCGGCTGATGAGAGATAAAGTTACTAAAGAACTTGTTGCTGTTAAATACATAGAAAGAGGCGATAAGATTGATGAAAATGTTCAGAGAGA AATAATAAATCATAGGTCATTGAGGCATCCCAATATTGTGAGGTTTAAAGAGGTGATTTTAACACCGACCCATTTGGCAATTGTAATGGAATATGCAGCT GGAGGAGAGCTTTTTGAGCGAATTTGCAAGAGTGGGCGATTCAGCGAGGATGAGGCACGGTTCTTCTTTCAACAACTTATATCTGGAGTCAGCTATTGTC ATGCCATGCAAGTATGTCACCGTGACTTGAAGTTGGAGAACACATTGTTGGATGATAGTCCTGCTCCTCGTTTGAAGATTTGTGATTTTGGGTACTCCAA GTCTTCAGTGCTTCACTCTCAACCGAAATCAACTGTGGGAACTCCTGCATACATTGCTCCAGAAGTTTTGTTGAGGCAAGAATATGATGGCAAGGTTGCA GATGTGTGGTCGTGTGGTGTAACCTTATATGTGATGCTGGTTGGATCATATCCCTTCGAGGACCCTGCTGAGCCTAAAGACTTCCGAAAGACAATACAGA GAGTTATTAATGTCCAGTATTCTATTCCAGACTCCATTCTGATAACCCCAGAGTGTTGCCACCTGATTTCAAGGATTTTTGATGCCGATCCTGCAACTAG GATTACCATCCCCGAAATCAGGAATCATGAGTGGTTTCTGAAGAATCTTCCCGCTGACCTAATGGATGAAAAAACTATGGGCAGCCAGTTTGAAGAGCCT GATCAGCCCATGCAGAGCGTTGATGCAGTCATGCAGATAGTTTCCGAGGCCACTGTACCAGCAGTTGGAGTGCATGGTCTTAATCGATGTATGATGGACA ATCTGGACATGGATGATGACATGGACGGTCTAGATTCTGAATCCGAGCTTGATATTGACAGCAGTGGGGAGATAGTTTATGCATTGTAA
AA sequence Show only first row Show all	>Potri.005G134400.1 pacid=42805576 polypeptide=Potri.005G134400.1.p locus=Potri.005G134400 ID=Potri.005G134400.1.v4.1 annot-version=v4.1 MDRSAMTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMRDKVTKELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYAA GGELFERICKSGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDDSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKVA DVWSCGVTLYVMLVGSYPFEDPAEPKDFRKTIQRVINVQYSIPDSILITPECCHLISRIFDADPATRITIPEIRNHEWFLKNLPADLMDEKTMGSQFEEP DQPMQSVDAVMQIVSEATVPAVGVHGLNRCMMDNLDMDDDMDGLDSESELDIDSSGEIVYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Potri.005G134400 [exp]	0	1
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	2.23	0.7648
AT1G13310			Endosomal targeting BRO1-like ...		Potri.010G128700 [exp]	3.46	0.7752
AT1G56300			Chaperone DnaJ-domain superfam...		Potri.005G020300 [exp]	10.39	0.7360
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073000 [exp]	23.10	0.7686
AT3G01820			P-loop containing nucleoside t...		Potri.015G093200 [exp]	27.94	0.7365
AT3G22260			Cysteine proteinases superfami...		Potri.006G021700 [exp]	59.79	0.6744
AT5G35460			unknown protein		Potri.006G145600 [exp]	70.21	0.7290
AT2G46080			unknown protein		Potri.002G162600 [exp]	74.61	0.7179
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	75.11	0.7284	ATMEPCT.1
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G236800 [exp]	88.99	0.6743

Compare expression of checked genes

Potri.005G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.