Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66860 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) AT4G23620 165 / 6e-50 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039700 [exp] 424 / 3e-152 AT5G66860 315 / 4e-109 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Potri.001G097801 [exp] 157 / 4e-47 AT4G23620 320 / 4e-111 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009338 [exp] 350 / 9e-123 AT5G66860 297 / 4e-102 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10019634 [exp] 340 / 4e-119 AT5G66860 293 / 8e-101 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1) Lus10000590 [exp] 146 / 1e-42 AT4G23620 329 / 2e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2) Lus10011005 [exp] 143 / 2e-41 AT4G23620 328 / 4e-114 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01386 [poplar] [flax] Ribosomal_L25p Ribosomal L25p family PF14693 [poplar] [flax] Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G135000.1 pacid=42805678 polypeptide=Potri.005G135000.1.p locus=Potri.005G135000 ID=Potri.005G135000.1.v4.1 annot-version=v4.1 ATGGCCAAGTGGTGGCGCAGCCTAAGGACGGCAATTCAATACCCACGACCGCCTCTATCACCACTGCAACCATTTCACTCCCAATCTTCACGTTACCACA CAATCCAAGCAATACCTCGAGAGGTTGCAGGCAGAAGAGTGTCAGCTAGAGAAAGAGAGCAAGGCAGAATCCCTGCTGTTGTTTTTCCTCAAAGTCTTCT TGATAAAAACCCATCGAACGGATTGACCTCAAGAAAGAGACTACTGACTACTGAGAAAAAACAGATTCAAGCCATTCTTAAGTCCGTACAACTCCCTTTC TTTTGCTCCACTACTTTCCCTCTTCAGGTCCGAGCTGGGTCTGGGTCCTCGATGTTGCTTGAATCCGGAACTGTAATGCCCATTAAGATACATAGGTCTG AAAAGACAGGGAAGATATTGAATTTGGTGTTTGTTTGGGCTGATGAGGGAACGGAACTGAAAGTTGACGTGCCTGTTGTTTTCAAAGGAGAAGAAAATTG TCCTGGTCTTAAGAAAGGAGGCCATCTGAAGATGATCAGAAGTACTCTAAAATATATTTGCCCAGCTGAACAAATTCCTCAAAAAATTGAGGTGGATGTA AGCAATCTAGATATCGAAGATAGAGTATACATGCGTGATATTGAGGTTCATCCATCGTTGAAGCTTCTGAGTAAGAATGAGAACTTGCCTATATGTAAGT GTGTGGCAACAAATTTGGATAGCCCAGAACCTGTGGCAACGAATTTGGAAAGGCCAGAACCTGCAGAGGTATAG
AA sequence Show only first row Show all	>Potri.005G135000.1 pacid=42805678 polypeptide=Potri.005G135000.1.p locus=Potri.005G135000 ID=Potri.005G135000.1.v4.1 annot-version=v4.1 MAKWWRSLRTAIQYPRPPLSPLQPFHSQSSRYHTIQAIPREVAGRRVSAREREQGRIPAVVFPQSLLDKNPSNGLTSRKRLLTTEKKQIQAILKSVQLPF FCSTTFPLQVRAGSGSSMLLESGTVMPIKIHRSEKTGKILNLVFVWADEGTELKVDVPVVFKGEENCPGLKKGGHLKMIRSTLKYICPAEQIPQKIEVDV SNLDIEDRVYMRDIEVHPSLKLLSKNENLPICKCVATNLDSPEPVATNLERPEPAEV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Potri.005G135000 [exp]	0	1
AT3G59980			Nucleic acid-binding, OB-fold-...		Potri.017G000200 [exp]	3.46	0.9278
AT1G76405			unknown protein		Potri.005G255100 [exp]	4.47	0.9266
AT2G32650			RmlC-like cupins superfamily p...		Potri.014G156900 [exp]	13.63	0.9097
AT1G73090			unknown protein		Potri.010G250100 [exp]	15.23	0.8912
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	17.74	0.8811
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	20.71	0.8664
AT3G04020			unknown protein		Potri.010G205900 [exp]	22.18	0.8273
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	25.69	0.8685
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	28.72	0.8716
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	29.49	0.8935

Compare expression of checked genes

Potri.005G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.