Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 589 / 0 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 337 / 6e-104 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 322 / 5e-101 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G09000 245 / 1e-71 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 238 / 1e-69 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 231 / 5e-67 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 231 / 1e-66 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 219 / 7e-63 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 218 / 7e-61 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT3G07980 218 / 1e-59 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039800 [exp] 932 / 0 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 457 / 3e-151 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 452 / 2e-149 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 348 / 1e-107 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 347 / 1e-107 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 343 / 6e-106 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 338 / 3e-104 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 321 / 3e-100 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 316 / 1e-98 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019635 [exp] 616 / 0 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 600 / 0 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 555 / 0 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 501 / 3e-171 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 441 / 7e-144 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10024645 [exp] 356 / 4e-111 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 353 / 4e-110 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 352 / 5e-110 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 338 / 3e-104 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 312 / 2e-95 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G135100.1 pacid=42802808 polypeptide=Potri.005G135100.1.p locus=Potri.005G135100 ID=Potri.005G135100.1.v4.1 annot-version=v4.1 ATGCGTTGGCTTCATAACATTTCCTTTTCTTCTTCTTCTTCTTCTTCAACTTCTTCTTCCCTTTCTCCTCATAAACGTTCATCTTCATCTTTCTCTTCTT CTTCAATGGCCACGGAGGAGACTCTCCCTTCGATTAGGAGAGGTCATGGCAGTCGTATTAGTCGGAATAATCATCGTAGTTTAAGGTTAGGTGGTGGTGG TGGTGATGAAAGGCCTAAGCTTATAAGGCAAAGGAAGTTAAGACATTTAACCGATCAAGACCTTGCAGGTAAAAAAAAGCAGGTGGCACCACCGGATCAT CATGTGGATTCTGGTGCCCTTCCGAGGTCAGCTTCTGCTTCGGTTGCTGTGCCATTACCGCTTCCATTGCCCGTGCCTTCTGGAGATGGGGACTTGAGGT TGCCTTCGCCCAAGGAGAGGCATCGCGATGGTTTTAGGGAAAGAGAAAGAGACAGGGGTGATAGGGTTGGAGAGGGATTATCTTCTTCGAATTCTCCAAT TTCTAGTACATTTGCTGGTCGAAACATGAAGAAAATGATCGAGCATCTACACTCTCAGTCACCTAGGATGGTACGTCCGGATTTCAGTACTGCTCAGAGT TCTCGGGACAACTTCGGGATCAATATTCCTACGAGGAGCGCTCCTACTAGTCCTTTCACAAGTCCTGTTCGCAGCCCACCAAGAACGAGTAACACTGCTG ATATGCTTCCTTACTACCGCATGATTGCTAAAGCAAATCAAGTCTGGTCTGCACCAGAGATGGCAACATTAGACATACCTGGGCTTCCTCCTCCAGCATT CATGGATATCACTGCTTTTAGTACTGATAGTTCTCCTCTTCAAAGTCCACCAAATTTAAGTCCCCAACGGAGTGCCAGAAGCCCAACTGGACCTCCATCA CCATTGATTGCCAAGTTATCAATCGAAAGCTCACCTGCATGGCGTGAAAGTAATGCTAATTTTGAGGTCCACCCTTTACCTCTTCCTCCAGGAGCATCTG TCCCTTCACCATCAGTACCAGTTCCTCTAGCTCTATCTAAACTAGAATCCACGTCTATGAAAAGTCATTGGCAGAAGGGAAAGCTAATTGGACGCGGTAC ATTTGGAAGTGTTTATGTTGCCAGCAATAGGGAAACTGGGGCATTATGTGCAATGAAGGAAGTGGAAATGTTTCCCGATGACCCAAAATCTGCCGAGTCT ATAAAGCAATTAGAACAGGAAATTAAAGTTCTTAGCCACCTGAAGCATCCAAACATTGTGCAGTATTATGGTAGTGAAATAGTGGATGATAAATTCTATA TATATCTGGAGTATGTTCATCCAGGTTCAATAAATAAATATGTACGTGAACATTGTGGAGCCATAACAGAAAGTGTAGTTCGTAATTTTAGTCGCCATAT TGTTTCTGGGCTAGCTTACTTGCACAGCACGAAGACAATACACAGGGATATAAAAGGGGCTAATTTGCTTGTTGATGCATCTGGAGTTGTGAAGCTTGCG GACTTTGGGATGGCAAAACTTCTTACTGGACAAGCTGCTGATCTTTCTCTAAAGGGAAGCCCTTACTGGATGGCTCCTGAGCTCATGCAAGCTGTAATGC ATAAGGATTCCAGCTCTGATCTTGCACTTGCTGTTGATATTTGGAGTTTGGGATGTACTATTATTGAAATGTTCACTGGGAAACCTCCTTGGAGCGAGTA TGAGGGGGCTGCAGCCATGTTTAAAGTTATGAGGGATAGCCCATCTATACCTGAAGTATTGTCACCAGACGGCAAGGATTTTTTGCGTTGCTGCTTTCGA AGAAACCCAGCAGAGAGACCGTCAGCAACCATGTTACTGGAACATCGGTGGTTGAAAAACTCTCAGCAGCTCGATGTATCATCTACCATCCAGTCAATCA GTGGGATAAAATTGACTGATATATCCCAAAGTCTAAGAGCTTCTGGAGTCAAATTTGATCATCTGCCAGGATTACCAAGCTCAAGAAGTACTAAAGGAAA GACGACTGCTGACAGCTTTGCGCATTATTCTTTTTCTCCAGCAAAACTGTCCAACGACTTCGTCATGAAACTTCCAACTTAA
AA sequence Show only first row Show all	>Potri.005G135100.1 pacid=42802808 polypeptide=Potri.005G135100.1.p locus=Potri.005G135100 ID=Potri.005G135100.1.v4.1 annot-version=v4.1 MRWLHNISFSSSSSSSTSSSLSPHKRSSSSFSSSSMATEETLPSIRRGHGSRISRNNHRSLRLGGGGGDERPKLIRQRKLRHLTDQDLAGKKKQVAPPDH HVDSGALPRSASASVAVPLPLPLPVPSGDGDLRLPSPKERHRDGFRERERDRGDRVGEGLSSSNSPISSTFAGRNMKKMIEHLHSQSPRMVRPDFSTAQS SRDNFGINIPTRSAPTSPFTSPVRSPPRTSNTADMLPYYRMIAKANQVWSAPEMATLDIPGLPPPAFMDITAFSTDSSPLQSPPNLSPQRSARSPTGPPS PLIAKLSIESSPAWRESNANFEVHPLPLPPGASVPSPSVPVPLALSKLESTSMKSHWQKGKLIGRGTFGSVYVASNRETGALCAMKEVEMFPDDPKSAES IKQLEQEIKVLSHLKHPNIVQYYGSEIVDDKFYIYLEYVHPGSINKYVREHCGAITESVVRNFSRHIVSGLAYLHSTKTIHRDIKGANLLVDASGVVKLA DFGMAKLLTGQAADLSLKGSPYWMAPELMQAVMHKDSSSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDSPSIPEVLSPDGKDFLRCCFR RNPAERPSATMLLEHRWLKNSQQLDVSSTIQSISGIKLTDISQSLRASGVKFDHLPGLPSSRSTKGKTTADSFAHYSFSPAKLSNDFVMKLPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	0	1
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	1.41	0.8830
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	2.82	0.8338
AT5G13590			unknown protein		Potri.010G213800 [exp]	6.92	0.8009
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G116001 [exp]	7.74	0.8246
AT3G14470			NB-ARC domain-containing disea...		Potri.003G015500 [exp]	9.79	0.8138
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	12.72	0.8329
					Potri.008G085150 [exp]	13.03	0.7994
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136301 [exp]	15.49	0.8097
					Potri.019G014314 [exp]	18.16	0.8078
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	18.65	0.8230

Compare expression of checked genes

Potri.005G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.