Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRX1.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 409 / 2e-143 Peroxidase superfamily protein (.1) AT5G19890 316 / 2e-107 Peroxidase superfamily protein (.1) AT5G06730 315 / 1e-106 Peroxidase superfamily protein (.1) AT5G06720 306 / 3e-103 ATPA2 peroxidase 2 (.1) AT4G36430 305 / 4e-103 Peroxidase superfamily protein (.1) AT2G18150 301 / 2e-101 Peroxidase superfamily protein (.1) AT2G18140 295 / 5e-99 Peroxidase superfamily protein (.1) AT5G05340 292 / 5e-98 Peroxidase superfamily protein (.1) AT1G44970 288 / 5e-96 Peroxidase superfamily protein (.1) AT5G66390 279 / 8e-93 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144600 [exp] 421 / 1e-148 AT1G49570 400 / 8e-140 Peroxidase superfamily protein (.1) Potri.009G106400 [exp] 415 / 3e-146 AT1G49570 429 / 2e-151 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 317 / 1e-107 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 310 / 4e-105 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 299 / 2e-100 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.005G118700 [exp] 296 / 3e-99 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 293 / 1e-98 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 294 / 2e-98 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.008G022248 [exp] 292 / 3e-98 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009901 [exp] 475 / 4e-170 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10020994 [exp] 390 / 3e-136 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10023858 [exp] 325 / 4e-111 AT1G49570 361 / 9e-125 Peroxidase superfamily protein (.1) Lus10026748 [exp] 305 / 6e-103 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10004163 [exp] 303 / 5e-102 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025535 [exp] 305 / 2e-101 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10041784 [exp] 301 / 2e-101 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10032786 [exp] 295 / 3e-99 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 293 / 1e-98 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10010634 [exp] 294 / 2e-98 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G135300.1 pacid=42802507 polypeptide=Potri.005G135300.1.p locus=Potri.005G135300 ID=Potri.005G135300.1.v4.1 annot-version=v4.1 ATGGAGCACAACTCCTTTAAACTTCCCTTTGTTCACTTGCTTTGCCTTCTGCTGTTGTGTCCTCTGGTGTCATGCCAGCTTAATTATAAATTCTATGATT ACACATGTCCTAACCTCACAAAAATTGTTCGATCTGGTGTTTGGTCTGCTATGAGAAATGATTCTAGGATGGCAGCTTCTCTGTTGAGGCTTCACTTTCA TGATTGTTTCGTTAATGGATGTGATGGGTCTTTGTTACTTGATGGAGGAGAGAAAAATGCATTTCCTAATCGAAACTCGGCTAGAGGTTTTGAAGTCATT GATGACATTAAAGCCAATTTGGAGAGAGCATGCCCAGCCACAGTTTCTTGTACTGATATACTGACTCTTGCGGCAAGAGAGGCAGTTTATCTTTCCGGAG GCCCATATTGGTTTCTACCCTTGGGCCGCCGAGATGGCCTGACAGCAAGTGAGAGTGATGCTAATGAGCAGCTCCCAGGATTTTCTGAACCGTTAGAGAA CATCACTGCAAAATTTACCTCAAAGGGTCTTGAACTAAAGGATGTGGTTGTGCTCTCAGGTGCACATACTATTGGATTTGCTCAGTGCTTCACATTTAAG TCTAGACTTTTTGACTTTGGAGGCTCTGGTGAACCAGATCCACTGCTTGATACAGCACTTCTAACAAGTTTGCAAAGTACGTGCCCAAATCAAGATGATT CTGACACAAAATTGGCTCCATTGGATTCTGCTAGTTCCAGCAAGTTTGATAACTTGTATTACAAGCTTCTTTTGAACAATTCTGGGCTTCTCCAATCAGA CCAAGCTCTCATGGGGGATAATACAACCTCTTCATTGGTCCTTAACTATAGCAAGTTCCCTTATTTGTTTTCCAAGGATTTTGGAGCATCAATGGTCAAG ATGGCCAACATTGGTGTCCTTACAGGACAAAATGGGGAGATCAGGAAAAATTGTAGGTTGGTGAACTAG
AA sequence Show only first row Show all	>Potri.005G135300.1 pacid=42802507 polypeptide=Potri.005G135300.1.p locus=Potri.005G135300 ID=Potri.005G135300.1.v4.1 annot-version=v4.1 MEHNSFKLPFVHLLCLLLLCPLVSCQLNYKFYDYTCPNLTKIVRSGVWSAMRNDSRMAASLLRLHFHDCFVNGCDGSLLLDGGEKNAFPNRNSARGFEVI DDIKANLERACPATVSCTDILTLAAREAVYLSGGPYWFLPLGRRDGLTASESDANEQLPGFSEPLENITAKFTSKGLELKDVVVLSGAHTIGFAQCFTFK SRLFDFGGSGEPDPLLDTALLTSLQSTCPNQDDSDTKLAPLDSASSSKFDNLYYKLLLNNSGLLQSDQALMGDNTTSSLVLNYSKFPYLFSKDFGASMVK MANIGVLTGQNGEIRKNCRLVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49570			Peroxidase superfamily protein...		Potri.005G135300 [exp]	0	1	PRX1.8
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.019G036100 [exp]	4.89	0.9531
AT4G20820			FAD-binding Berberine family p...		Potri.011G162968 [exp]	5.91	0.9367
AT4G20820			FAD-binding Berberine family p...		Potri.011G162884 [exp]	6.70	0.9350
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176500 [exp]	6.92	0.9400
AT4G20820			FAD-binding Berberine family p...		Potri.011G162900 [exp]	7.54	0.9272
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.019G100001 [exp]	8.48	0.9330
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	9.05	0.9475
AT2G34930			disease resistance family prot...		Potri.001G262800 [exp]	9.79	0.9354
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.013G056700 [exp]	14.49	0.9344
AT4G22030			F-box family protein with a do...		Potri.004G008800 [exp]	14.96	0.9209

Compare expression of checked genes

Potri.005G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.