Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 553 / 0 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 208 / 5e-64 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G38740 199 / 3e-63 ROC1 rotamase CYP 1 (.1) AT3G56070 197 / 2e-62 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 197 / 2e-62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 195 / 2e-61 ROC3 rotamase CYP 3 (.1.2) AT2G29960 192 / 3e-60 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT4G34870 191 / 4e-60 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT5G58710 189 / 1e-58 ROC7 rotamase CYP 7 (.1) AT3G55920 188 / 5e-58 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040100 [exp] 619 / 0 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 570 / 0 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 563 / 0 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G240200 [exp] 202 / 3e-64 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 201 / 6e-64 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.019G014396 [exp] 200 / 1e-63 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.002G047200 [exp] 213 / 8e-63 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G021500 [exp] 197 / 2e-62 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G168800 [exp] 196 / 9e-62 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020992 [exp] 559 / 0 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10023860 [exp] 556 / 0 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012059 [exp] 543 / 0 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 479 / 1e-170 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 204 / 5e-65 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 202 / 2e-64 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10017258 [exp] 197 / 2e-62 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10024831 [exp] 210 / 5e-62 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 207 / 4e-61 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 193 / 1e-60 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.005G135500.1 pacid=42802636 polypeptide=Potri.005G135500.1.p locus=Potri.005G135500 ID=Potri.005G135500.1.v4.1 annot-version=v4.1 ATGGCAAAGCCAAGATGTTATTTAGATATAAGTATAGGAGGAGAGCTAGAAGGGAGAATAGTGGTGGAGTTATACAAAGATGTTGTCCCTAAAACTGCGG AGAACTTCAGGGCTTTGTGCACCGGTGAAAAAGGCATTGGACCCAACACTGGTGTCCCTCTTCATTACAAGGGGGGTCGTTTTCATCGTGTTGTCAGAGG TTTTATGATACAAGGTGGTGACATATCAGCAGGGGATGGAACTGGAGGAGAATCTATATATGGATTGAAATTTGAGGATGAAAACTTTGAGTTGAAACAT GAAAGAAAAGGAATGTTGTCAATGGCTAATATGGGCCCTGACACCAATGGATCTCAGTTTTTTATCACAACCACTCGAACTTCTCATCTAGATGGAAAGC ATGTTGTTTTTGGGAAGGTAACCAAAGGAATGGGAGTGGTTCGTTCTATTGAGCACGTTGTGACTGAGGGAGGTGATTCTCCCTCTCAAGAAACAGTAAT TGTTGATTGCGGGGAAATTCCTGAAGGAGAGGACGATGGGATATCTGACTTCTTTAAAGACGGTGATACTTATCCTGATTGGCCGGCAGACCTAGACATG AAGCCAGATGAGATTTCTTGGTGGATGAAGGCAGTTGATTCGATCAAAGCTTTTGGAAACGAACAGTACAAGAAGCAAGACTGTAAGATGGCTCTTCGAA AGTATCGTAAGGCTTTGCGCTACCTGGATGTTTGTTGGGAGAAGGAAGACATTGATGAAGAGAAGAGCTCATCACTGAGGAAGACAAAGTCTCAGATATT TACAAATAGCTCTGCTTGTAAACTGAAGCTTGGAGATATTAAAGGAGCATTATTGGACACAGACTTTGCCATGCGTGATGGAGAAGACAATGCAAAAGCT TTTTTCCGCCAAGGCCAGGCATATATGGCACTCAATGACATAGACGCTGCAGTTGCAAGCTTCAAGAAGGCTCTAGACTTGGAGCCCAATGATGGAGGAA TAAAGAAAGAGCTTGCCAGTGCTAGGAAGAAGATTGCTGATAGGCATGATCAGGAGAAAAGGGCCTATGCTAGAATGTTTCAATAG
AA sequence Show only first row Show all	>Potri.005G135500.1 pacid=42802636 polypeptide=Potri.005G135500.1.p locus=Potri.005G135500 ID=Potri.005G135500.1.v4.1 annot-version=v4.1 MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGRFHRVVRGFMIQGGDISAGDGTGGESIYGLKFEDENFELKH ERKGMLSMANMGPDTNGSQFFITTTRTSHLDGKHVVFGKVTKGMGVVRSIEHVVTEGGDSPSQETVIVDCGEIPEGEDDGISDFFKDGDTYPDWPADLDM KPDEISWWMKAVDSIKAFGNEQYKKQDCKMALRKYRKALRYLDVCWEKEDIDEEKSSSLRKTKSQIFTNSSACKLKLGDIKGALLDTDFAMRDGEDNAKA FFRQGQAYMALNDIDAAVASFKKALDLEPNDGGIKKELASARKKIADRHDQEKRAYARMFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	0	1
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	2.82	0.7750	Pt-POL.1
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	3.74	0.8011
AT4G17895		UBP20	ubiquitin-specific protease 20...		Potri.003G092400 [exp]	5.29	0.7424	Pt-UBP21.1
AT5G52950			unknown protein		Potri.012G033800 [exp]	12.84	0.7301
					Potri.010G002600 [exp]	13.03	0.7355
AT5G48240			unknown protein		Potri.014G170500 [exp]	13.03	0.7556
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	14.14	0.7662	Pt-RHL2.1
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	14.69	0.7531
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	19.79	0.7371
AT4G11790			Pleckstrin homology (PH) domai...		Potri.003G120900 [exp]	21.33	0.6995

Compare expression of checked genes

Potri.005G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.