Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRK.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 956 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 830 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 818 / 0 Protein kinase superfamily protein (.1) AT1G49580 816 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 810 / 0 Protein kinase superfamily protein (.1) AT2G46700 676 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 642 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 618 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 487 / 1e-166 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 459 / 4e-156 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040800 [exp] 1062 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.004G143700 [exp] 873 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 850 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 821 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 798 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.002G176700 [exp] 695 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 691 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 675 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G057600 [exp] 459 / 9e-156 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002966 [exp] 973 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 806 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 716 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 664 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 624 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 466 / 2e-158 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 461 / 1e-157 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 399 / 5e-133 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10038460 [exp] 376 / 6e-124 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 367 / 2e-120 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.005G135900.1 pacid=42804778 polypeptide=Potri.005G135900.1.p locus=Potri.005G135900 ID=Potri.005G135900.1.v4.1 annot-version=v4.1 ATGGGTATTTGCACCTCAAAGCCCTCCCCAAACTCCACTCTCTTCTCTCCCGTCGCTATACAAGCTAAGGACAACTCTATCCCTACCAATGATACAGCTA AACCGGATCCAGCCACCGCAAGTCTTAACGATCACACCAACAAAACCACAGTAGAACCCGTTAAAAAATCTCCATTGTTTCCTTTCTACAGTCCAAGTCC GGCTCACCGCTTTTTTTCCAAGAAGTCTTCGCCGGCGAGATCTCCGGCGAGGAATGCGGCCAGTGCGAACTCAACGCCGAAGAGGTTTTTTAAACGTCCG TTCCCGCCGCCGTCTCCGGCGAAGCATATACGAGCAGTGCTTGCGAGGCGGCATGGATCAGTGAAGCCGAACGAGGCGGCGATACCGGAGGGAAGCGAGA CTGGGGGGGAAGGGTTAGATAAGAGCTTTGGCTTCTCTAAGCATTTTGGAAACAAGTATGAGCTTGGAGATGAAGTAGGGCGAGGACATTTTGGGTATAC TTGTCAAGCTAAGTTTAAAAAAGGTGAACTCAAAGGACAACAGGTTGCTGTTAAAGTAATCCCTAAAGCAAAGATGACTACAGCAATTGCCATTGAAGAT GTGAGAAGGGAGGTGAAAATATTGAGAGCATTGACCGGACATAACAATTTAGTACATTTTTATGATGCCTATGAAGATCATGATAATGTCTATATAGTAA TGGAGTTATGTGAAGGAGGGGAACTCTTGGATAGAATTCTTGCAAGGGGTGGAAAATATTCAGAAGACGATGCAAAGGCTGTCATGATACAGATATTAAA TGTTGTTGCATTTTGCCATCTTCAGGGTGTGGTACACCGGGATCTTAAACCTGAGAATTTCTTGTTCACATCAAAGGATGAAAACTCCCAGTTGAAGGCC ATAGATTTTGGTTTGTCAGATTTTGTAAAGCCAGATGAAAGATTGAACGACATTGTTGGTAGTGCGTACTATGTAGCACCAGAAGTTCTACATAGATCTT ATGGTACAGAGGCTGATGTGTGGAGTATTGGTGTGATTGCATATATTTTGTTGTGTGGAAGCCGGCCATTTTGGGCCAGGACTGAGTCTGGGATCTTCCG CGCTGTTCTAAAAGCTGATCCAAGTTTTGATGAGACACCTTGGCCTTCTCTTTCTCCCGAGGCAAAGGACTTTGTCAAACAACTGTTAAATAAAGACCCA CGAAAAAGATTGACTGCTGCCCAAGCACTAAGTCATCCCTGGATTAAAAATTCTAATGATCTTAAAGTGCCTCTCGATTTACACATTTTCAAACTCATGA AGGCTTATATGCGCTCGACATCTCTTCGAAAAGCTGCTTTAAAGGCTCTATCTAAAACGTTGACTGTGGATGAGCTGTTTTATTTGAAGGAGCAGTTTGC GCTCTTAGAACCAAACAAAAATGACGCAATAAGCTTAGAAAATATCAAAGCGGCCTTGATGAAAAATGGTACAGATGCAATGAAGGACTCACACATTCCT GATTTTATAGCATCACTCAATGCACTTCAATACAGAAGGATGGATTTTGAGGAATTTTGTGCGGCTGCATTAAGTGTCCATCAGCTAGAGGCCCTTGATC GATGGGAGCAACGTGCCCGTTGCGCCTATGAACTGTTTGAGAAGGATGGGAACAGGGCCATTGTCATCGAGGAGCTTGCATCGGAACTTGGCCTTGGCCC TTCTGTTCCTCTTCATGCTGTTCTACATGATTGGATTCGGCACACCGATGGAAAGTTGAGTTTCCTTGGATTTGTCAAATTGTTGCGTGGGGCATCTAGC AGGATTCTTGCCAAAGCTCAGTAG
AA sequence Show only first row Show all	>Potri.005G135900.1 pacid=42804778 polypeptide=Potri.005G135900.1.p locus=Potri.005G135900 ID=Potri.005G135900.1.v4.1 annot-version=v4.1 MGICTSKPSPNSTLFSPVAIQAKDNSIPTNDTAKPDPATASLNDHTNKTTVEPVKKSPLFPFYSPSPAHRFFSKKSSPARSPARNAASANSTPKRFFKRP FPPPSPAKHIRAVLARRHGSVKPNEAAIPEGSETGGEGLDKSFGFSKHFGNKYELGDEVGRGHFGYTCQAKFKKGELKGQQVAVKVIPKAKMTTAIAIED VRREVKILRALTGHNNLVHFYDAYEDHDNVYIVMELCEGGELLDRILARGGKYSEDDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSQLKA IDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSPEAKDFVKQLLNKDP RKRLTAAQALSHPWIKNSNDLKVPLDLHIFKLMKAYMRSTSLRKAALKALSKTLTVDELFYLKEQFALLEPNKNDAISLENIKAALMKNGTDAMKDSHIP DFIASLNALQYRRMDFEEFCAAALSVHQLEALDRWEQRARCAYELFEKDGNRAIVIEELASELGLGPSVPLHAVLHDWIRHTDGKLSFLGFVKLLRGASS RILAKAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.005G135900 [exp]	0	1	CRK.3
AT5G06270			unknown protein		Potri.006G206000 [exp]	9.16	0.8088
AT5G13520			peptidase M1 family protein (....		Potri.008G045900 [exp]	16.88	0.7667
AT3G22060			Receptor-like protein kinase-r...		Potri.004G032000 [exp]	23.62	0.8039
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.015G141200 [exp]	24.69	0.7690	Pt-EMS1.1
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	25.09	0.7617
AT2G41890			curculin-like (mannose-binding...		Potri.016G053800 [exp]	29.91	0.6922
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	33.88	0.7163
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	48.83	0.7712
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	67.82	0.7606
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	67.97	0.7067

Compare expression of checked genes

Potri.005G135900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.