Plant FIBer expression Database

Potri.005G136000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66840 232 / 6e-71 SAP domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G069700
[exp]
180 / 7e-52 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008134
[exp]
98 / 1e-22 AT5G66840 127 / 1e-32 SAP domain-containing protein (.1)
Lus10013172
[exp]
46 / 2e-05 ND 46 / 1e-05
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
Representative CDS sequence
>Potri.005G136000.1 pacid=42805694 polypeptide=Potri.005G136000.1.p locus=Potri.005G136000 ID=Potri.005G136000.1.v4.1 annot-version=v4.1
ATGGCGCCTGACAGCGACAGGAAGCGCAAACGCCGTTTCGTTTGCCTATCTTCCAGTTCATCATCAGAAGAAAGTACCGACGATGATGAAGTTGAAGAAA
TCAGTGGGGATGAAAGCAATTACAGCGACGAAGAGGAGGAAGAGGAGGACGGCGGCGAGGAGGAGGAGGAGGAGTCAGTTTGCGAAAGAGTCATTTCTCT
TCTTAGAGAAGGGAATGAATTAGAGGGTTTATATTTAAAACATTGTAAAGCCTATTTACGCCATTATGGACTTAGGCTAGCTGGAACCAAGGCGGTCTGT
ATTCAGAGAATCAAGGAGCATTGGAGGTTAAAGGATGAAAATGGAGAAGAACTTTATCCAAGGTCGTCGTTTTTAATAAATTGTAGAGGTGATGTCTGTA
AAGGAGATGTTGTCATGTTTGTGCAGAAAGTTTATTCGAAATTTAACAAAGTGACAAGACATGGGAAGATTCTCGGGAGAAGAACTGTAGCAGGCAGGGT
TGTGAAGGAAAGCTATGGTTCTGCCAAACAACAGCATACATTTACGGTTGAAGTGCTGTGGAGTAAAGGAGTTAAGAAACTGCCTCCACTTTCTCCTCTG
CTTGTGAAAGGCCGGAATCTCTACAAATTGAGAACTTTCAGACAATGTTGGATTAATGAAGCGGAAAGACAGAAAGTCCTTGCTGAAAAGCACAAACGAG
GTACAGCGGCAAGACTTATGAGAACAATGAAGAAATCTGCGATGGCATGGTCTGAAAATGGAGATGCAAAGTGTCATAAACGGGCCCATCACAGAAGACC
ATCTCAAATGAGAAAGATGACTGAACTAGAAAAGAGGAAGCGTATTGATGGATGTAGAAGAGACACGTTGCAGCTACCCGAAACATTTAAAAATCATCAC
CAGCAGGCCCTGGCATCACTGGATGTGAACAGAAATATGAACTTACACGGATCTAAAACTTTTTGGAAACATCGAAAACGAGGAAACATCAATGTGGATA
TGGGCCCAACTCTGCAGGCTTATGCATGTACTACCCAATGCATATCACAAATAGAACCTCATCAAAGGAGTGTGCTATGCCATTCCTCTCGATATGACAC
AGACTCCTCTTCAACTGTGATGGCATTGCCTACTTGGAGGCCCTATGCCGATACAATTGGGATGCATGCACAATATCAGGGTTTTAGTCAAAAACAGTAG
AA sequence
>Potri.005G136000.1 pacid=42805694 polypeptide=Potri.005G136000.1.p locus=Potri.005G136000 ID=Potri.005G136000.1.v4.1 annot-version=v4.1
MAPDSDRKRKRRFVCLSSSSSSEESTDDDEVEEISGDESNYSDEEEEEEDGGEEEEEESVCERVISLLREGNELEGLYLKHCKAYLRHYGLRLAGTKAVC
IQRIKEHWRLKDENGEELYPRSSFLINCRGDVCKGDVVMFVQKVYSKFNKVTRHGKILGRRTVAGRVVKESYGSAKQQHTFTVEVLWSKGVKKLPPLSPL
LVKGRNLYKLRTFRQCWINEAERQKVLAEKHKRGTAARLMRTMKKSAMAWSENGDAKCHKRAHHRRPSQMRKMTELEKRKRIDGCRRDTLQLPETFKNHH
QQALASLDVNRNMNLHGSKTFWKHRKRGNINVDMGPTLQAYACTTQCISQIEPHQRSVLCHSSRYDTDSSSTVMALPTWRPYADTIGMHAQYQGFSQKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66840 SAP domain-containing protein ... Potri.005G136000
[exp]
0 1
AT5G47790 FHA SMAD/FHA domain-containing pro... Potri.006G003100
[exp]
22.51 0.7336
Potri.002G057450
[exp]
23.74 0.7285
AT5G53420 CCT motif family protein (.1.2... Potri.012G014000
[exp]
27.87 0.7027
AT3G56860 UBA2A UBP1-associated protein 2A (.1... Potri.016G023800
[exp]
50.59 0.7030
AT3G60190 ADL1E, ADL4, AD... ENHANCED DISEASE RESISTANCE 3,... Potri.002G135100
[exp]
55.45 0.6985
AT4G26455 WIP1 WPP domain interacting protein... Potri.001G472000
[exp]
68.41 0.6904
AT2G47330 P-loop containing nucleoside t... Potri.002G194600
[exp]
70.21 0.6525
AT5G41790 CIP1 COP1-interactive protein 1 (.1... Potri.003G137400
[exp]
71.38 0.6975
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Potri.002G116400
[exp]
74.73 0.7054
AT1G68910 WIT2 WPP domain-interacting protein... Potri.010G135900
[exp]
80.49 0.6794

Potri.005G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.