Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50560 374 / 5e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 51 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 44 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 40 / 0.001 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040900 [exp] 440 / 5e-158 AT3G50560 361 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G052500 [exp] 53 / 8e-08 AT1G24470 353 / 2e-122 beta-ketoacyl reductase 2 (.1) Potri.008G181600 [exp] 50 / 6e-07 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.016G074000 [exp] 48 / 2e-06 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 46 / 1e-05 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 44 / 5e-05 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G084100 [exp] 44 / 7e-05 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G228533 [exp] 44 / 7e-05 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 42 / 0.0002 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034626 [exp] 62 / 3e-11 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024146 [exp] 59 / 1e-09 AT3G06060 450 / 6e-160 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 58 / 1e-09 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 57 / 3e-09 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 54 / 3e-08 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 52 / 2e-07 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 51 / 3e-07 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10026260 [exp] 50 / 7e-07 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 47 / 6e-06 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042088 [exp] 47 / 1e-05 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.005G136200.8 pacid=42802976 polypeptide=Potri.005G136200.8.p locus=Potri.005G136200 ID=Potri.005G136200.8.v4.1 annot-version=v4.1 ATGCGGAGCATGGCGAGCTCCAGCTCCAATAAAGGCATCGCAGCCATTGTAGGCGTGGGACCGAAGCTCGGCCGAACCATTGCCCGCAAGTTTGCCCATG AAGGCTACACGGTTGCCATCCTTGCCCGTGACTTAGGGAGGCTATCAAGATTTGCAGATGAGATAGCAAGGGAGGAGAAATCTCAAGTTTTTGCAATCAG GATAGACTGCTCGGATTCAAGAAGTGTGAGAGAGGCATTTGAAGGTGTTCTTTCACTTGGATTTGTAGAAGTACTTGTGTACAATGCGTATCAACCAGCA GTCTATCGGCAACCCACCAACTTCACCCATATTCCCGCCGACTCTTTCGAGAAGTCCCTCGCTATCTCCTCCGTCGGTGCCTTCCTTTGTGCCCAACAGG TTCTTCCGGGCATGGTGGAAAGAGGGAAAGGGACAATTCTATTCACGGGTTGTTCAGCTTCTTTAAATGGCATTGCTGGTTTCTCTGAGCTCTGTTGTGG AAAGTTTGCCTTGAGAGCTCTATCACAATGTTTAGCCAGTGAGTTTCAGTCTCAAGGTGTGCACGTTGCCCATGTTATCATCGATGGTGTGATTGGCCCT CCTAGGGAAATTGGCAATTGCAGGGGACCATCAAGCTCTCAGAGAACGTCAGTTGGGGAACAAGAACAACAAGAACAACAAGGTATGGGTGGAATTGGAG AGATGATGATGGACCCAGACTCGCTGGCTCAAACCTACTGGCATTTGCATGTTCAAGACCGGACTGCTTGGACCCAGGAGATCGACCTCCGTCCCTCTTA CTCCATCAACCCCGGATTCCACTAG
AA sequence Show only first row Show all	>Potri.005G136200.8 pacid=42802976 polypeptide=Potri.005G136200.8.p locus=Potri.005G136200 ID=Potri.005G136200.8.v4.1 annot-version=v4.1 MRSMASSSSNKGIAAIVGVGPKLGRTIARKFAHEGYTVAILARDLGRLSRFADEIAREEKSQVFAIRIDCSDSRSVREAFEGVLSLGFVEVLVYNAYQPA VYRQPTNFTHIPADSFEKSLAISSVGAFLCAQQVLPGMVERGKGTILFTGCSASLNGIAGFSELCCGKFALRALSQCLASEFQSQGVHVAHVIIDGVIGP PREIGNCRGPSSSQRTSVGEQEQQEQQGMGGIGEMMMDPDSLAQTYWHLHVQDRTAWTQEIDLRPSYSINPGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.005G136200 [exp]	0	1
AT4G39230			NmrA-like negative transcripti...		Potri.004G156650 [exp]	8.30	0.8994
AT2G33450			Ribosomal L28 family (.1)		Potri.008G169800 [exp]	12.16	0.9104
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088900 [exp]	12.64	0.8949
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	24.10	0.8952
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.005G205800 [exp]	24.37	0.8559
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	25.49	0.8905
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.016G065300 [exp]	27.11	0.8779
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	30.59	0.8992	GHS1.1
AT3G03620			MATE efflux family protein (.1...		Potri.013G069600 [exp]	32.24	0.8859
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G083300 [exp]	34.33	0.8922

Compare expression of checked genes

Potri.005G136200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.