Plant FIBer expression Database

Potri.005G136300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50590 815 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G041000
[exp]
1083 / 0 AT3G50590 2389 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009343
[exp]
855 / 0 AT3G50590 2169 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10002967
[exp]
433 / 3e-135 AT3G50590 1778 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF06957 COPI_C Coatomer (COPI) alpha subunit C-terminus
Representative CDS sequence
>Potri.005G136300.5 pacid=42802941 polypeptide=Potri.005G136300.5.p locus=Potri.005G136300 ID=Potri.005G136300.5.v4.1 annot-version=v4.1
ATGCTTGATTTGTTTATATGCCACCTTAACCCCAGTGCCATGAGGTGTCTTGCTCAGAAACTGGAAGAAGAAGGTTTGGATTCAGAGTTGAGGCGGTACT
GTGAAAGGATTTTACGAGTTCGCTCTACTGGCTGGACACAAGGCATTTTTGCCAACTTTGCTGCTGAAAGCATGGTTCCCAAAGGTCCTGAATGGGGTGG
TGGGAACTGGGAAATTAAAACTCCTGCTAATTTGAATAGTGTACCTCAGTGGGAGCTGGCTGGAGAAGTGATGTCATACATGAAGACTGATGATGGTACC
ATACCAGCCATTATTACTGACCATATCGGTGTTTACCTGGGTTCAATTAAAGGAAGAGGCAATGTTGTTGAAGTAAGGGAAGATAGTTTGGTCAAAGCTT
TTATCCCTGCAGGTGACAATAAGCCAAATGGGCTTCCCAATTCCTTAGCTAAATCCATTTCCAACAAGTCAAATGGTCTGCCTGCTGGTCATGTGAAGCT
TGATGCTTTGATGGGTCTGGAAACTCTTACTAAACACGCAGGTACCTCTGCTGCCGATCAACAGGCAAAAGCAGAAGAGGAATTCAAGAAAACGATGTAT
GGAAGTGCTACTGATGGTAGCAGCAGTGATGAGGAAGGAGTGTCAAAAACAAAGAAGCTGCAAATTAGAATTCGGGATAAGCCAGTTTCATCTACTACAG
TGGATGTCAACAAGATCAAAGAAGCTACAAGGCAGTTTAAACTTGGTGATGGTTTAGGCCCACCTATGAGGACAAAATCATTAACTGGCTCCCAGGATCT
TGGTCAGATTTTATCCCAACCTCCTACTAGTGCAAATGCAGCTAGCACTGCCCCTGCTGATTTGTTTGGTACTGATCCCTTAACGCAGACAGTGCCAGTA
TCACAACCAGGTCTGATGGTCATGGGTGGAGGAGTTACAACTGGACCTATCCCAGAAGACTTTTTCCAGAACACAATACCTTCCCTGCAAGTTGCAGCAT
CATTGCCTCCTCCAGGAACTTTTCTTGCAAAACTGGATCAAATTTCTCAAGGGGTTGGAAGGAACAATATAGCACCCAACCCAGCTGCTGCTTCTGTGAC
TGATATTGGTCTTCCTGATGGTGGTGTTTCACCACAACCATCTCAACTAGCTGCCTCATTTGTGTCCATTGGACTTGTTGATGGTGGTGTCCCGCCACAA
GCTTCTGGTCAGGCTGCCATTCCACCTCAGTCTCAAGTTCAAGTACCTCAGGTCCAGCTTTCTACACCTCCTCTTGATCTTAGTGTTCTTGGAGTTCCAG
ATTCAGGAAAATCTCCTGCCCCTGCATCTCCGCCGTCATCTGTGAGACCTGGACAGGTTCCCCGAGGGGCAGCTGCACCTGTATGTTTCAAGACTGGACT
TGCACACCTTGAACAGAATCAACTACCTGATGCCCTGTCCTGTTTTGATGAAGCTTTCCTGGCACTAGCTAAGGATAACTCTCGTGGAGCTGATATCAAA
GCTCAAGCAACCATCTGTGCTCAGTACAAGATAGCAGTAACTCTTCTCAAGGAAATTGCACGGCTGCAGAAAGTGCAAGGCCCAAGTGCACTCAGTGCAA
GGGGTGAGATGGCTAGATTGTCAAGGCATCTGAGTTCTTTGCCTCTACTGGCAAGGCACCGAATAAATTGCCTCCGAACCGCCATCATGCGAAATATGGA
AGTGCAGAACTTTGCATATGCCAAGCAGATGCTTGAGCTGCTCCTGTCCAAAGCTCCACCAAGTAAGCAGGATGAGTTGAGAAGCCTGATTAACATGTGC
GTTCATAGGGGTTTGTCCAATAAGTCTATTGATCCTTTGGAAGATCCTTCCCAGTTCTGTGCTGCCACGCTCAGCCGTCTTTCAACAATCGGATACGATG
TGTGTGATCTCTGCAGAGCCAAATTTTCAGCTCTCTCTGCACCTGGATGCATAATCTGTGGAATGGGAAGTATTAAAAGATCAGATGCACTCACAGGGCC
TGTTCCTTCCCCATTTGGCTGA
AA sequence
>Potri.005G136300.5 pacid=42802941 polypeptide=Potri.005G136300.5.p locus=Potri.005G136300 ID=Potri.005G136300.5.v4.1 annot-version=v4.1
MLDLFICHLNPSAMRCLAQKLEEEGLDSELRRYCERILRVRSTGWTQGIFANFAAESMVPKGPEWGGGNWEIKTPANLNSVPQWELAGEVMSYMKTDDGT
IPAIITDHIGVYLGSIKGRGNVVEVREDSLVKAFIPAGDNKPNGLPNSLAKSISNKSNGLPAGHVKLDALMGLETLTKHAGTSAADQQAKAEEEFKKTMY
GSATDGSSSDEEGVSKTKKLQIRIRDKPVSSTTVDVNKIKEATRQFKLGDGLGPPMRTKSLTGSQDLGQILSQPPTSANAASTAPADLFGTDPLTQTVPV
SQPGLMVMGGGVTTGPIPEDFFQNTIPSLQVAASLPPPGTFLAKLDQISQGVGRNNIAPNPAAASVTDIGLPDGGVSPQPSQLAASFVSIGLVDGGVPPQ
ASGQAAIPPQSQVQVPQVQLSTPPLDLSVLGVPDSGKSPAPASPPSSVRPGQVPRGAAAPVCFKTGLAHLEQNQLPDALSCFDEAFLALAKDNSRGADIK
AQATICAQYKIAVTLLKEIARLQKVQGPSALSARGEMARLSRHLSSLPLLARHRINCLRTAIMRNMEVQNFAYAKQMLELLLSKAPPSKQDELRSLINMC
VHRGLSNKSIDPLEDPSQFCAATLSRLSTIGYDVCDLCRAKFSALSAPGCIICGMGSIKRSDALTGPVPSPFG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50590 Transducin/WD40 repeat-like su... Potri.005G136300
[exp]
0 1
AT3G54230 SUA suppressor of abi3-5 (.1.2) Potri.017G138401
[exp]
1.41 0.9562
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.003G073100
[exp]
2.00 0.9516
Potri.001G466500
[exp]
3.87 0.9450
AT5G54370 Late embryogenesis abundant (L... Potri.001G405650
[exp]
4.47 0.9378
AT5G35570 O-fucosyltransferase family pr... Potri.006G142400
[exp]
5.19 0.9201
AT1G14540 Peroxidase superfamily protein... Potri.008G022264
[exp]
6.00 0.9251
AT1G21280 unknown protein Potri.006G109250
[exp]
6.00 0.9300
AT2G35110 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNAR... Potri.015G124200
[exp]
6.48 0.9242
AT1G57790 F-box family protein (.1) Potri.012G106800
[exp]
6.92 0.9391
AT5G05800 unknown protein Potri.008G196901
[exp]
7.34 0.9387

Potri.005G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.