Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66820 116 / 9e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041300 [exp] 2097 / 0 AT5G66820 109 / 1e-24 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009344 [exp] 982 / 0 AT5G66820 141 / 5e-35 unknown protein Lus10002968 [exp] 971 / 0 AT5G66820 140 / 8e-35 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF12371 [poplar] [flax] TMEM131_like Transmembrane protein 131-like
Representative CDS sequence Show only first row Show all	>Potri.005G136600.5 pacid=42804346 polypeptide=Potri.005G136600.5.p locus=Potri.005G136600 ID=Potri.005G136600.5.v4.1 annot-version=v4.1 ATGGACGACATCCACAGCTTAACAATCATATCTCCCCAACAACATAAGCACAAGCTCTTCATGTTCCACCTCCCGGGATTGGTTCACCAGGTCAAAGCAT TCCATATTATTCTGGTTCTGTCGTGTGCCCTTTTCTGCTTTGCTATGTGCGGACCGTGCTTGACGAATGGAATGCAGAATTCCATGGAAGATGATTCTTG TGAGTCCTATGGGGATGATGGTAGTGTTGGATTTCAAGATTTTAGCATTGGTGATACTAGTTTGGGCTATGCAGCTGGAAGTTCTATGACCCACTTAAAT TTTGAGAATATTTGTACCAATTCTCATTTGTTCTGCTTTCTTTCAACATTGCCTGGTTTTTCGCCTAAAGAACACAAGCTTAAAGTAGCTGCTTTAGAAG TTTCTAGGAGTCAGTCTGATGGTTCGTTATCTGTAGAATCAACTCAGGGTAGCAGGTGGTTAGAGAACAAGAACTGGTCATTGGAGCATGGCATGTTCCA GTTATCAAATGGCCTGGCTGTTTCCTGTTCTATGAACTCTAGGGAAGGTGTTGATGAGTTATCATCCACTCAAACCAGTAGAGCTGACCAATGTGACCCT TCTTCGTGTAAAGGTCCTTTACCATCTCAGAAGAGCACAAGTGCCAGGCTGAGGAAAAAGTCTGAGATGATGAACTATAGTGCTTTAGATGTTTCTCCTC CCCATGTAGAAATCAGCCCTCCTGTAGTTGACTGGGGGCAGAGGCATTTATATTATCCCTCAGTAGCATTCTTAACAGTGGCAAATACCTGTAATGAGAG CATTTTACATCTCTTTGAACCATTTAGTACCAATACACAGTTCTATGCCTGCAATTTTAGTGAGGTTTTGTTAGGACCAGGTGAAGTAGCTTCAATTTGT TTTGTGTTTTTGCCTAGATGGTTGGGCTTTTCCTCAGCTCATTTGATCTTGCAGACAAGCTCTGGTGGATTCCTGGTCCAGGTCAAGGGTTATGCGGTTG AGTCGCCTTACAATATTAGTCCTTTATTCAGCCTTGATGTTCCTTCTAGTGGACAGTTGAGGAAGACTTTTTCTTTATTTAATCCTTTCGATGAAACCCT CTATGTGAAGGAAGTAAGTGCATGGATATCAGTTTCTCAAGGGAATATTTTGCATAACACTGAAGCAACCTGCAGTTTGGAAATTTTGGGAGGTCCTGAT GAGCTCAGCCTGTTGGGAGTCAAGGATTGGTTGGTTGTTAGGAATGCTCAAATGGGTTTTCCATTGATGGCTATGAAGCCCCAAGAAAGTTGGGAGATCC TTCCTCACAGCAGTGGAACCATCATGGAGATGGACTTCTCATTTGAATCTGAAGGAAATGTTTATGGTGCTTTTTGTATGCAGTTGCTGAGGTCCTCTCA GGACAAGACCGATACTGTAATGGTTCCTCTCGAGCTTGAATGGGATGGAAAAGTAGCTTACAGTGGCTTTGCCGGTTTAGTTTCAGTTTCTCTTGAAACT CTGGTTCCATATGATGTTGGCAGCACCGTTGTTGTTGCTATCTCATTGAGAAATGAAGCTCCTCATGTGTTGAATGTTGTCAATGTTAGGGAAGTTGCAG CAGTGAAGGCTTTCCAGATCAAGTACATTGAAGGCTTGCTACTTTTCCCTGGCACTGTCACACAAGTTGCTACAATTACATGTACGCATCTACTTGTTCA ATTACATGATTCTACATCTGAAATGTCAAATATGAACAAAGACTGCAAATTAGTGGTACTGACAAATGACTCGAGGAGTCCTCAAATTGAAATTCCTTGT CAGGATATAGTCCATATTTGTTTGAGACATCAGAAGGATTCATTCATTGGATATGACAATCACTCCGAAGATGCCAAATCTGGTGAAAGGACTGAAACTG GCAATAGAAGGACAGGGTCATTGTGCAGCGGCAAGCTGTCGCTGTTAGAGATAAAGGCGATAGAGACAGCAGAAGCAGATGAATTTGTACTGGGCAATTG GAAATCTCAAGGTACCATGAGTGGCATGTCTGTGCTTGATGATCATGAGGTGTTGTTCCCAATGGTTCAGGTTGGAACTCATCACTCTAGGTGGATCACT GTAAAGAATCCTAGTGAACAACCAGTTGTAATGCAGCTCATTCTTAACTCAGGAGAGATTATTGATGAGTGCAGGGGCACAGATGGTTCTATGGATCCCC CTTCATCGAGAATTTTTGTCCATGATGAATTGACTGCTCCTGCCAGGTATGGGTTCTCAATGGCAGAGAGTGCACTAACAGAAGCTTATGTTCATCCTTA TGGCAAAGCATCTTTTGGACCAATATTCTTTCATCCTTCAAATCGTTGTGGGTGGAGAAGTTCAGCCCTGATAAGAAACAATCTTTCTGGTGTAGAGTGG TTATCTTTGATAGGGTTTGGAGGGTTACTCTCTCTAGTCCTGCTTGATGGTTCAGAGCCTGTTCAGAGCATAGAATTTAACCTTAACTTGCCAATGCCCC TGAATATTTCTCCTCCAGATGGGCTATTTAACATGAAAGAGACTGCTTGTGCTTGTTCTGTGCCCTCATCTAAAGAGCTGTATGCCAAGAATATGGGAGA CTTGCCACTTGAGGTGAAAAGTATTGAAGTTTCTGGGTCTGAGTGTGGGTTGGATGGGTTTATGGTTCACACTTGTAAAGGTTTTTCTCTTGAACCAGGT GAGTCAATAAAGCTTCTGATCTCATACCAGTCTGATTTTTCTGCAGCTATGGTGCACGGAGATCTTGAACTGGCCTTGACTAGTGGAATTCTTGTGATAC CCATAAAGGCAAGTCTTCCTTTGTACATGTTCAATCTCTGTAAAAAATCAGTATTCTGGATGCAGTTGAAGAAATTCTCTGCTGCAGTCCTCCTTGCCAC TTCCTTAATGTTTCTGATATTCTGTTGCATATTTCCTCAAGTGGTTGCTTTTGGCTTTAAGAATTACTATCATAACAGTGAGAAAAGCTCCACTAATACT GTAAGAAGTGCAGGAAAAGCTTCTCATATGCATCGTAACCAGAGAAAGAGTAAGTTCTCTATGTCCAGGGGAATGGACAGTTTGTTAACATCAGTTGGGG AAGACAAGGCCTCTAATCAGACATCTATTGGTAAATATGCTGATGGTCATGATGGACCCCTGGAACAGGGGCTAACTATTAATAATTTGACATCAACTCT AGAAAATCACAAACAAGATAGCATTTTGTCTTATACTAAAAAGGATAAAGCAGTACCATCTTTGATGTCAAAATCCATAGCGGTTGAGAATTCTGATACA CTTGATGCTCCCCAATCTCCGAACTTTACAGTCAGGATCGGAAAAGAGAAAGGAAGAAGGCGAAGGAGGAAGAAGGGTGTGAGTGCATGCTTAACAGGAC CGCTTGAAGTATCGAGTAATCAAAGTGGAAATTCTACCCCTTCATCTCCCCTGTCTCCTGTATCTGCAACACCCAACCGAATATGGTCGCCATCTTCTGA TGCAGACACTATTGAGGTGAGAAATCCATTCACTCAAGTGGCAGCCCAACAGTTCAGGAAGGTTCTGGTTTCTGAATCTGCTACCAAGACAGTTGTCCTG GAGCCCAAGGTTTCTATGAAATGCTATGGTTACAACTACTTTTCTGCTACTTGTGAGCAACCTTTAGTGCCCAGCAAGACCTTTTCTAAACCTTCTCCTG CATTTCCTTGTTCTAGTGATGCTGCCCCCAGTCTGCATTATTCTTCTCCCTTGTCATCAACATCAACATCAACATCAACAATTGCTCCTATTGTTCGAGC TCCTGGAGCAAAACTTTTAAACCAAAGAAGTGTTAAAGTAGATGAAAAGGTGGGGAGTGAATATACATATGATATCTGGGGTGACCATTTTTCTGAACTC CATTTGGTGGGTAGCCCAAAGGATAATACAACCACGAAAACAATAGCAACAGAAGACAATTCCAATAGCTTCTTTGTAGGGTGTCCACAAACCCTGGTGG TGAAATCTCAACCAAAATCTGTGAGTTTCTTTCAACAAGAGGGTTAA
AA sequence Show only first row Show all	>Potri.005G136600.5 pacid=42804346 polypeptide=Potri.005G136600.5.p locus=Potri.005G136600 ID=Potri.005G136600.5.v4.1 annot-version=v4.1 MDDIHSLTIISPQQHKHKLFMFHLPGLVHQVKAFHIILVLSCALFCFAMCGPCLTNGMQNSMEDDSCESYGDDGSVGFQDFSIGDTSLGYAAGSSMTHLN FENICTNSHLFCFLSTLPGFSPKEHKLKVAALEVSRSQSDGSLSVESTQGSRWLENKNWSLEHGMFQLSNGLAVSCSMNSREGVDELSSTQTSRADQCDP SSCKGPLPSQKSTSARLRKKSEMMNYSALDVSPPHVEISPPVVDWGQRHLYYPSVAFLTVANTCNESILHLFEPFSTNTQFYACNFSEVLLGPGEVASIC FVFLPRWLGFSSAHLILQTSSGGFLVQVKGYAVESPYNISPLFSLDVPSSGQLRKTFSLFNPFDETLYVKEVSAWISVSQGNILHNTEATCSLEILGGPD ELSLLGVKDWLVVRNAQMGFPLMAMKPQESWEILPHSSGTIMEMDFSFESEGNVYGAFCMQLLRSSQDKTDTVMVPLELEWDGKVAYSGFAGLVSVSLET LVPYDVGSTVVVAISLRNEAPHVLNVVNVREVAAVKAFQIKYIEGLLLFPGTVTQVATITCTHLLVQLHDSTSEMSNMNKDCKLVVLTNDSRSPQIEIPC QDIVHICLRHQKDSFIGYDNHSEDAKSGERTETGNRRTGSLCSGKLSLLEIKAIETAEADEFVLGNWKSQGTMSGMSVLDDHEVLFPMVQVGTHHSRWIT VKNPSEQPVVMQLILNSGEIIDECRGTDGSMDPPSSRIFVHDELTAPARYGFSMAESALTEAYVHPYGKASFGPIFFHPSNRCGWRSSALIRNNLSGVEW LSLIGFGGLLSLVLLDGSEPVQSIEFNLNLPMPLNISPPDGLFNMKETACACSVPSSKELYAKNMGDLPLEVKSIEVSGSECGLDGFMVHTCKGFSLEPG ESIKLLISYQSDFSAAMVHGDLELALTSGILVIPIKASLPLYMFNLCKKSVFWMQLKKFSAAVLLATSLMFLIFCCIFPQVVAFGFKNYYHNSEKSSTNT VRSAGKASHMHRNQRKSKFSMSRGMDSLLTSVGEDKASNQTSIGKYADGHDGPLEQGLTINNLTSTLENHKQDSILSYTKKDKAVPSLMSKSIAVENSDT LDAPQSPNFTVRIGKEKGRRRRRKKGVSACLTGPLEVSSNQSGNSTPSSPLSPVSATPNRIWSPSSDADTIEVRNPFTQVAAQQFRKVLVSESATKTVVL EPKVSMKCYGYNYFSATCEQPLVPSKTFSKPSPAFPCSSDAAPSLHYSSPLSSTSTSTSTIAPIVRAPGAKLLNQRSVKVDEKVGSEYTYDIWGDHFSEL HLVGSPKDNTTTKTIATEDNSNSFFVGCPQTLVVKSQPKSVSFFQQEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66820			unknown protein		Potri.005G136600 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Potri.004G126760 [exp]	4.69	0.8180
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	11.66	0.7918
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	16.97	0.7402	SDG913,EMB173.1
AT4G03000			RING/U-box superfamily protein...		Potri.008G198300 [exp]	20.07	0.7501
AT1G04970			lipid-binding serum glycoprote...		Potri.014G160700 [exp]	26.53	0.7406
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	27.71	0.7437	Pt-SSTP.2
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016500 [exp]	28.84	0.7243
AT5G07290		AML4	MEI2-like 4 (.1)		Potri.003G162700 [exp]	29.58	0.7204	AML1.9
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	30.72	0.6973
AT3G43220			Phosphoinositide phosphatase f...		Potri.006G136400 [exp]	30.78	0.6842

Compare expression of checked genes

Potri.005G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.