Plant FIBer expression Database

Potri.005G136700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G50610 79 / 7e-17 unknown protein
AT5G66816 69 / 2e-14 unknown protein
AT1G59835 41 / 0.0002 unknown protein
AT5G66815 39 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G041601
[exp]
293 / 3e-95 AT3G50610 74 / 9e-15 unknown protein
Potri.005G136800
[exp]
46 / 2e-06 AT5G66816 45 / 4e-07 unknown protein
Potri.007G042000
[exp]
45 / 7e-06 AT5G66816 43 / 2e-06 unknown protein
Potri.007G041400
[exp]
44 / 7e-06 AT2G23440 45 / 2e-07 unknown protein
Potri.007G041500
[exp]
39 / 0.0007 AT2G23440 54 / 3e-11 unknown protein
Potri.014G034500
[exp]
38 / 0.001 AT5G66815 43 / 1e-06 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009346
[exp]
108 / 5e-27 AT3G50610 108 / 5e-28 unknown protein
Lus10002970
[exp]
105 / 2e-26 AT3G50610 98 / 2e-24 unknown protein
Lus10009345
[exp]
40 / 0.0002 AT2G23440 42 / 1e-06 unknown protein
Lus10002969
[exp]
39 / 0.0005 AT2G23440 44 / 7e-07 unknown protein
Lus10009347
[exp]
39 / 0.0008 AT2G23440 50 / 2e-09 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G136700.1 pacid=42804698 polypeptide=Potri.005G136700.1.p locus=Potri.005G136700 ID=Potri.005G136700.1.v4.1 annot-version=v4.1
ATGGCGGAAACATGTAAATGTGCTCTTTTTATTCTTGCACTTATTACTTGCTTTCAAATTCTGTTCACTGAAGGCAGGCCAATCAAGTCAACGAATAAGC
AGGAACTTGTTTCCGTTGGAAAGGATTCCATAGAAGATGTGGCCAAGCAGGGTTTGAATACCAAATCACACTACAACAATGCAAAGAACCAGAAAGTTTC
TCTACCTGCACCCCCAATTACTCACAATCCTAGTGTTCACCATTCCAAGGCAGGCAGAAATGAAATGCCCCATCCTGCAGTCCCAAGCTTCGGCAATTCT
GCTGCTGTTTATAAGGATGATTTTCGGCCAACAACACCGGGCGTTAGTCCTGGTGTTGGGCATCCAAAGACAATAGGGACTAACTCCAACAATGAACATT
CTCTCACTGATTTCAAAGATGATTTCCAGCCCACAACACCAGGTCACAGTCCTGGGGCTGGCCATGCTCTTGCCAATGATGATGACAATGAGGAAGTTTC
TCCAAAGGCACCTGGCCCTAGTATCGAACGTTCTGGTACAGCATTCAAACCCACAACACCAGGTCACAGTCCTGGGGCTGGCCATGCTCTTGCCAATGAT
GATGACAATGAGGAAGTTTCTCCAAAGGCACCTGGCTCTAGTATCGAACGTTCTGGTACAGCATTCAAACCCACAACACCAGGCCACAGTCCTGGGATTG
GCCATCTTTTTTCAGAGAATGACAGTGAAGATATTGACCCAAAGGCGCCTGATACTAGCTCCAGTTCCGGAGATTCTGTCACAGCATCCAAACCAAAGAC
AACTGGTAACAGCCGTGGTATTAGCCATACGTTATCAGCAGATAAGAATGAAATTACTGCCTCAAAGGCTTCCAGCATTGAACATTCAGTCACAGGAGTC
ACAGATGATTTCCGACCTACAGTACCGGGTCACAGCCCTGGGATTGGTCATGTTCTTCAAAACACGAACGAAGAACGGAAAGCATAG
AA sequence
>Potri.005G136700.1 pacid=42804698 polypeptide=Potri.005G136700.1.p locus=Potri.005G136700 ID=Potri.005G136700.1.v4.1 annot-version=v4.1
MAETCKCALFILALITCFQILFTEGRPIKSTNKQELVSVGKDSIEDVAKQGLNTKSHYNNAKNQKVSLPAPPITHNPSVHHSKAGRNEMPHPAVPSFGNS
AAVYKDDFRPTTPGVSPGVGHPKTIGTNSNNEHSLTDFKDDFQPTTPGHSPGAGHALANDDDNEEVSPKAPGPSIERSGTAFKPTTPGHSPGAGHALAND
DDNEEVSPKAPGSSIERSGTAFKPTTPGHSPGIGHLFSENDSEDIDPKAPDTSSSSGDSVTASKPKTTGNSRGISHTLSADKNEITASKASSIEHSVTGV
TDDFRPTVPGHSPGIGHVLQNTNEERKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G50610 unknown protein Potri.005G136700
[exp]
0 1
AT5G43580 UPI UNUSUAL SERINE PROTEASE INHIBI... Potri.005G221000
[exp]
1.41 0.9149
AT5G66816 unknown protein Potri.007G042000
[exp]
3.87 0.8685
AT5G15630 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4... Potri.012G062200
[exp]
4.47 0.9134
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Potri.008G072800
[exp]
6.00 0.8477
AT5G23170 Protein kinase superfamily pro... Potri.003G010300
[exp]
11.35 0.7894
AT2G30210 LAC3 laccase 3 (.1) Potri.013G152700
[exp]
17.77 0.8713
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.019G078600
[exp]
40.24 0.8152
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Potri.006G206900
[exp]
41.82 0.8348
AT4G12430 TPPF trehalose-6-phosphate phosphat... Potri.003G112400
[exp]
42.60 0.7981
AT3G53480 PIS1, ABCG37, P... polar auxin transport inhibito... Potri.002G188900
[exp]
43.17 0.8502

Potri.005G136700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.