Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50620 532 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G15730 478 / 2e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 464 / 3e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042100 [exp] 679 / 0 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G105200 [exp] 490 / 2e-175 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 481 / 7e-172 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 475 / 1e-169 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009348 [exp] 494 / 4e-177 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 490 / 1e-175 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 437 / 2e-154 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012072 [exp] 436 / 3e-154 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 396 / 2e-138 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 395 / 2e-138 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00685 [poplar] [flax] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Potri.005G136900.1 pacid=42802719 polypeptide=Potri.005G136900.1.p locus=Potri.005G136900 ID=Potri.005G136900.1.v4.1 annot-version=v4.1 ATGGCTGAGTATATCTGTTTATTAAACAAGGATACGATAGTCATAAAGCCTGCTAAGAAAACTCCAATTTTGTTAAGGATGATAGTCTTAATGTTTGCAA TGGTTTGTGGAGTTTATATCTGCTCAGTTTGTTTAAAGCAGACAAGTATCCATAGTAAAATTAAATTTCAAGATATCCAAGTAGTTGAGAGGCTGTCTCC TGATGATGACCATGGAAATCTGCAAATTTCTAGTGTACATTATCCAAATCCCGAAACTTTTAGCAGGGCTGAATGTGCGCATAATCCTGTACGGTACTTT GCTATATTGTCGATGCAAAGATCAGGGAGTGGATGGTTTGAAACATTGTTAAACAGTCATGTTAATGTGAGCTCAAATGGAGAGATATTTTCTGTTCTTG ATAGGAGGAGAAATATTTCATCAATTACACGAACTCTTGATAAAGTCTACAATTTGGACTGGTTCACTAGTGCATCAAAGAATGAATGCTCCGCAGCAGT TGGCTTCAAGTGGATGCTTAATCAGGGAGTAATGCAGCATCATAAGGAAATATCAGACTACTTCAACCGCAGGGGTGTATTTGCAATATTTTTGTTTCGA AGAAATCTACTACGTCGCATGGTTTCAGTTCTTGCGAATTCCTATGATCGCCATGCTAAGCTATTGAATGGAACCCACAAGTCTCATGTTCATTCCACCG AAGAGGCCAAAACACTTGCGAAGTACAAGCCTATGATAAATTCCACACTGTTGATTTCTGATCTGAAGGAGGTTGAAATCACAGCTGCCAAGGCTTTAGA ATACTTCAATAGCACCAGGCACATTGTTCTGTACTATGAGGATCTCATAAAAAACCCTGCTAAACTTAAGGACGTTCAAGCATTTCTAGGTCTTCCGCTG ATGGAGTTAATGAGCCGTCAGGTCAAGATACACAAAGGTCCATTGTCAGACCATGTTAAGAACTGGGAAGATGTCAACAAGACACTGAATGGAACTGCAT ATGAGAGTTTCCTCCAAGCTGATTATTAA
AA sequence Show only first row Show all	>Potri.005G136900.1 pacid=42802719 polypeptide=Potri.005G136900.1.p locus=Potri.005G136900 ID=Potri.005G136900.1.v4.1 annot-version=v4.1 MAEYICLLNKDTIVIKPAKKTPILLRMIVLMFAMVCGVYICSVCLKQTSIHSKIKFQDIQVVERLSPDDDHGNLQISSVHYPNPETFSRAECAHNPVRYF AILSMQRSGSGWFETLLNSHVNVSSNGEIFSVLDRRRNISSITRTLDKVYNLDWFTSASKNECSAAVGFKWMLNQGVMQHHKEISDYFNRRGVFAIFLFR RNLLRRMVSVLANSYDRHAKLLNGTHKSHVHSTEEAKTLAKYKPMINSTLLISDLKEVEITAAKALEYFNSTRHIVLYYEDLIKNPAKLKDVQAFLGLPL MELMSRQVKIHKGPLSDHVKNWEDVNKTLNGTAYESFLQADY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	4.00	0.9194	Pt-BGAL3.1
AT4G14650			unknown protein		Potri.008G159200 [exp]	4.24	0.9203
AT5G58520			Protein kinase superfamily pro...		Potri.001G280700 [exp]	6.00	0.9055
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	8.12	0.9211
AT3G25130			unknown protein		Potri.002G246400 [exp]	9.21	0.9172
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	9.38	0.9236
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	10.09	0.9171
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.011G063200 [exp]	11.66	0.8927
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	14.49	0.9168
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	14.96	0.8986

Compare expression of checked genes

Potri.005G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.