Plant FIBer expression Database

Potri.005G137100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66810 748 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016766
[exp]
858 / 0 AT5G66810 766 / 0.0 unknown protein
Lus10022461
[exp]
851 / 0 AT5G66810 756 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10607 CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence
>Potri.005G137100.3 pacid=42803872 polypeptide=Potri.005G137100.3.p locus=Potri.005G137100 ID=Potri.005G137100.3.v4.1 annot-version=v4.1
ATGGACTCGACGCCAGTGAACTGGGAAGCTCTAGACAGACTCATACTAGATTTTGCAAAATCAGAGAATTTAATCGACGACTCCGCTTCAACATCAATAA
TATCCTCTCCATCCTCTTCTCCTCCAAGTTTCTCTTCCTCTTATCAATCACGATTCATCATTCGCCAGATCAGACGGTTCTTAGAGTCCGGTGACATTGA
CTCTTCTCTTCATCTTCTCCGCTCCCACGCTCCTTTTATTCTCGATGATCATCGTCTCCTGTTTCGCTTACAGAAACAGAAATTTATGGAGTTATTAAGG
AGAGGAACGGACGAGGCGAGGGATTCTGCTATTGAATGCACAAGGACGGCTCTCGCTCCATGTGCACTTGATGCGTATCCGGAAGCATATGAGGAATTTA
AGCATGTTCTCCTTGCCTTTATATACGACAAAGATGATCAAAATTCTCCTGTGGCAAATGAGTGGTCTGAAAGGAGGAGGTTTGAAATTGCTGGATTAAT
GTCCTCAGTCTTAAGAGCTCATTTACAGGCATATGATCCAGTCTTTTCTATGACATTAAGATATTTAATAAGCATACACAAGGGGTTTTGCATTCGTCAA
GGTATTTCATCACCCATTTCAGATCTTACTGAAAGGTTGCTCCTTGAAGAGCGTGATCCTCCTGCTGTTCCACAAGAGAGTTTTTATGAAGCACCTCCAT
TTGATGAGGTGGACATACAAGCACTTGCACATGCCGTGGAGCTTACGAGACAAGGGGCAATTGACAGCTTGAGATTTGCTAAGGGAGACCTGTTTCAGGC
ATTCCAGAATGAGCTATGTCGGATGAAGGTGGATGTTTCAATGCTTGATGAGCTTGTTCATGAGTATTGTGTCTACAGGGGTATTGTCGATTCTGGTCTT
GCATTGCCTTCTGTACCAGGATTAAAAACCCTCGCCGAGCCTTTAAAAGTTGGTCAATCAGAGCCGGGCTATTGTTCCTCAAGGAACTACTCTTTTGAGG
GTGACAATACTAACAGTAAACATTCAGATGGTGAAACTTCTGTAAGCAATGCTCATATGAATGGCTCTCCTGAGGATAGTGTGGATGTGAATAGCATACA
AGGAACTGATGTTGAGTTAAGATATGCTTGTGAATCAACAAACTGTTATGAGGATTGCAGCACCAGCGGATCACATCAAGCAGGAATTTCCAAAGTTCTC
CAAAGAAACAGAAATTATACAACTGGAGAAAGGAGCAAACGCAAGCGATGGAGGGGGAGGCAAGATGACGAAGACTATAAGCAAGATGTTAATGCCACCA
GTACAAATTTATCCAGGGAACAACAGAATATTTATCTGCAGGGCCTGGAAAAGCATCCTTCAGCAGACATAAAGAGTAGAGATGATAAATATGAGATTGT
ACTTGGGATGAAGGAACTGGCAGGTAGAGGAATGGCAGCAGAGGTCGTGGAAGAAGTTACTGCTTTGGATCCAAACTTTTTTCTGCAAAATCATATCTTG
CTCTTCCAGTTGAAACAAGTTGAATTCCTTAAACTGGTTAGCTCTGGTGATCATTCAAGTGCTCTAAGGGTTGCAAGCTCACACTTAGGGCCCATAGCAT
CAAGAGATCCTTCTTTGTTGAAGCCCTTGAAGGAGACTTTGTTGGCATTGCTCTGGCCTAATGAAGATGCCCTTGGAAAAGGGTTGCCTTTACATGCTCT
TTCAACTTCTCTTCAGTTTGCGATAGGTCGGAAGCTTGGTGTTGAAGAACCGCAGCTTATGAAGCTGATGAGAGCAACCCTCCAAACTCACAATGAGTGG
TTTAAACTTCAAATGTGCAAAGATCGTTTTGAAAGTCTTCTAAGGATTGATTCTTTGAAAGATGTTAATACTCCCTTGATTTCTGCTTGTTCCATGTCGA
AGTCAAATGCTGATAGCTGCACCCATGGATCCTCCCAAGTTACAATATCTTCCAGCACTAGGGTTTCAGAAGATGGTAGCAGCGCAACTCAAGAGTCATC
TAGAGATGTTTGTGATGAAAATGCAATACTAAAAGTTATGGAATTTCTTGCGCTGCCAAGGGCTGATGCTATCCATCTTCTTGCACAGTACAATGGAAAT
GCGGAGACTGTCATCCAGCAAATATTCGCTTAG
AA sequence
>Potri.005G137100.3 pacid=42803872 polypeptide=Potri.005G137100.3.p locus=Potri.005G137100 ID=Potri.005G137100.3.v4.1 annot-version=v4.1
MDSTPVNWEALDRLILDFAKSENLIDDSASTSIISSPSSSPPSFSSSYQSRFIIRQIRRFLESGDIDSSLHLLRSHAPFILDDHRLLFRLQKQKFMELLR
RGTDEARDSAIECTRTALAPCALDAYPEAYEEFKHVLLAFIYDKDDQNSPVANEWSERRRFEIAGLMSSVLRAHLQAYDPVFSMTLRYLISIHKGFCIRQ
GISSPISDLTERLLLEERDPPAVPQESFYEAPPFDEVDIQALAHAVELTRQGAIDSLRFAKGDLFQAFQNELCRMKVDVSMLDELVHEYCVYRGIVDSGL
ALPSVPGLKTLAEPLKVGQSEPGYCSSRNYSFEGDNTNSKHSDGETSVSNAHMNGSPEDSVDVNSIQGTDVELRYACESTNCYEDCSTSGSHQAGISKVL
QRNRNYTTGERSKRKRWRGRQDDEDYKQDVNATSTNLSREQQNIYLQGLEKHPSADIKSRDDKYEIVLGMKELAGRGMAAEVVEEVTALDPNFFLQNHIL
LFQLKQVEFLKLVSSGDHSSALRVASSHLGPIASRDPSLLKPLKETLLALLWPNEDALGKGLPLHALSTSLQFAIGRKLGVEEPQLMKLMRATLQTHNEW
FKLQMCKDRFESLLRIDSLKDVNTPLISACSMSKSNADSCTHGSSQVTISSSTRVSEDGSSATQESSRDVCDENAILKVMEFLALPRADAIHLLAQYNGN
AETVIQQIFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66810 unknown protein Potri.005G137100
[exp]
0 1
AT2G43190 ribonuclease P family protein ... Potri.001G033900
[exp]
1.41 0.8404
AT3G09560 ATPAH1 PHOSPHATIDIC ACID PHOSPHOHYDRO... Potri.006G214800
[exp]
1.41 0.8595
AT1G10790 unknown protein Potri.001G210600
[exp]
4.00 0.8230
AT1G36370 SHM7 serine hydroxymethyltransferas... Potri.001G212000
[exp]
8.30 0.8264 SHMT9
AT4G13630 Protein of unknown function, D... Potri.002G242900
[exp]
9.48 0.8015
AT1G27760 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-... Potri.014G016800
[exp]
16.43 0.7684
AT1G50620 RING/FYVE/PHD zinc finger supe... Potri.001G358900
[exp]
22.13 0.8041
AT3G03750 SUVR3, SDG20 SET domain protein 20 (.1.2) Potri.013G064600
[exp]
22.58 0.7726 SDG935
AT4G34370 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE... Potri.009G111200
[exp]
22.62 0.7214
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Potri.010G055000
[exp]
23.47 0.7671

Potri.005G137100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.