Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MAP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37040 539 / 0 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 367 / 1e-126 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT3G25740 322 / 6e-109 MAP1C, MAP1B methionine aminopeptidase 1C (.1) AT2G45240 239 / 6e-76 MAP1A methionine aminopeptidase 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117200 [exp] 365 / 1e-125 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.014G067300 [exp] 252 / 6e-81 AT2G45240 673 / 0.0 methionine aminopeptidase 1A (.1) Potri.016G119700 [exp] 45 / 3e-05 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.006G102200 [exp] 42 / 0.0004 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 514 / 1e-174 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 507 / 9e-172 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10021701 [exp] 372 / 5e-128 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10035045 [exp] 357 / 1e-122 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10021657 [exp] 257 / 8e-83 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10001650 [exp] 225 / 1e-70 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10003379 [exp] 44 / 0.0002 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 44 / 0.0002 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10002851 [exp] 42 / 0.0004 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.005G137400.8 pacid=42803458 polypeptide=Potri.005G137400.8.p locus=Potri.005G137400 ID=Potri.005G137400.8.v4.1 annot-version=v4.1 ATGGTTGGCGCCTCTTCCCTGCAACCAAGGCTCCTCTCTTCTTTTGTAGGAGATCGTTTGCTTCTATCAAAACAGCCAGTTTCTCGTCTCTTTCTCTACA AACCAGGAAACAAACATGTGTCAATGCAACTATCTAGAACGCTTTCTGGCTTGACCAATCTTTTATTCAATAGAAGCAGAAATCTGGATGAAGTGCCTAA TGCCGAGCAGCAACGTCTAAGGCCAGGGAAGTTGTCTCCTCGTCGACCTGTTCCAGATCATATACCAAGGCCTCCCTATGTCAATTCTCGGCAACCACCT GGCATTGCAAGTGGGGCCGAAGTGCATGATGAGAATGGGATAGAATGCATGAGATCTTCTGGAAAGCTTGCGGCCCAGGTTCTTCAGTATGCTGGGACTT TAGTCAAGCCAGGTATAAAAACAGATGACATTGACCAAGCAGTTCATCAAATGATAATTGATAACGGAGCATATCCTTCACCTCTTGGATATGGTGGGTT TCCTAAGAGTGTCTGCACATCAGTGAATGAGTGTATTTGCCATGGAATACCAGACTCACGTGCTCTTGAGGATGGTGATATAATCAACATTGATGTTACA GTTTATCTAAATGGTTATCATGGTGATACCTCAGCAACTTTCTTTTGTGGAGATGTTGATGATGAAGCCAGAAAACTGGTTCAGGTGACTGAAGAATGCC TTTACAGAGCAATATCAATTTGTGCACCGGGAGTAGAGTACAAGAAAATTGGCAAAACAATACATGACCATGCAGATAGATATTCTTACGGTGTTGTCCG ACATTTTGTTGGCCATGGTGTTGGACGTGTATTCCATGCCGATCCCGTTGTTCAGCACTTCAGAAACAATGATGGTGGGCGCATGATGTTGAATCAGACC TTCACTATTGAACCCATGTTGACAATTGGTAGCGTTAACCCTGTAATGTGGGATGATAACTGGACAGTTGTAACCGAAGATGGAAGCCTATCAGCACAGT TCGAGCACACCATTCTAATCACAAAAGACGGGGCTGAGATATTGACCCAGTGTTAA
AA sequence Show only first row Show all	>Potri.005G137400.8 pacid=42803458 polypeptide=Potri.005G137400.8.p locus=Potri.005G137400 ID=Potri.005G137400.8.v4.1 annot-version=v4.1 MVGASSLQPRLLSSFVGDRLLLSKQPVSRLFLYKPGNKHVSMQLSRTLSGLTNLLFNRSRNLDEVPNAEQQRLRPGKLSPRRPVPDHIPRPPYVNSRQPP GIASGAEVHDENGIECMRSSGKLAAQVLQYAGTLVKPGIKTDDIDQAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDIINIDVT VYLNGYHGDTSATFFCGDVDDEARKLVQVTEECLYRAISICAPGVEYKKIGKTIHDHADRYSYGVVRHFVGHGVGRVFHADPVVQHFRNNDGGRMMLNQT FTIEPMLTIGSVNPVMWDDNWTVVTEDGSLSAQFEHTILITKDGAEILTQC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37040		MAP1D	methionine aminopeptidase 1D (...		Potri.005G137400 [exp]	0	1	MAP1.2
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	1.73	0.9786
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	2.44	0.9772
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Potri.006G049100 [exp]	3.46	0.9689
AT4G15545			unknown protein		Potri.010G027400 [exp]	3.87	0.9590
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Potri.006G124400 [exp]	5.29	0.9591
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	7.93	0.9713
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Potri.013G064700 [exp]	10.81	0.9639
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	10.95	0.9639	RNP1.1
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	11.48	0.9527
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	12.24	0.9685

Compare expression of checked genes

Potri.005G137400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.