Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19150 50 / 2e-07 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT3G50630 46 / 5e-06 ICK2, KRP2 KIP-related protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042300 [exp] 203 / 6e-66 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.009G103600 [exp] 50 / 1e-07 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.004G142100 [exp] 49 / 5e-07 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [poplar] [flax] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G137500.1 pacid=42805349 polypeptide=Potri.005G137500.1.p locus=Potri.005G137500 ID=Potri.005G137500.1.v4.1 annot-version=v4.1 ATGGTGAAAGTTGCTGCTGCTCAAGTTGGGGTGACAAGTAGTAGAGCTTCAGCGCAAACTTCAAAGAGAAGATCAAGGCATATCAGGATTTCTATTGAAT TTAGAAGCAATGTTACTAACCACCGCCGCCGCCGCCGCCAAGACGTTATAATTAGGTCTGAAAATCCAGTTCCATGTAAACCGGATGCTAATTCCGGTGA CCGGACGGTGACTGAAGAGAGATGTTCAACTTCAAGCCCTAACTTGGAAGACGACGACGACGACGACGACGCATTAATGTCTGCTTCTTGTTGTTCCAGT AATGGATCGTGTGATGATGAGAGGATTAAATTCACAGATCTGGAGGAAGGGAGTGTTGAAGTTGAAACGTCAATGTATTATAGTAGTAGAAGTGGAGAAA GAGAGACAACACCGACTTCTAGCGATCTTGGAGAGGAGTCGACCTCAGAGAACATGGATTCAACGGCAAACCCACCATTGAAGAAGCCGAATCCTCATCA AAGATCAACGCCCACGGCGGGGCTGATAAGGATAGCAGATGAAGAGATTGAAAAGTTCTTCGGCGAAATACAGAAAAACATTCCACAATGCTTCAAAGAC AAGTATAACTTTGATTTTGACAAAGATGAGCCGTTGGAAGGACGTTATGAATGGGCTAGATTAAATCCATGA
AA sequence Show only first row Show all	>Potri.005G137500.1 pacid=42805349 polypeptide=Potri.005G137500.1.p locus=Potri.005G137500 ID=Potri.005G137500.1.v4.1 annot-version=v4.1 MVKVAAAQVGVTSSRASAQTSKRRSRHIRISIEFRSNVTNHRRRRRQDVIIRSENPVPCKPDANSGDRTVTEERCSTSSPNLEDDDDDDDALMSASCCSS NGSCDDERIKFTDLEEGSVEVETSMYYSSRSGERETTPTSSDLGEESTSENMDSTANPPLKKPNPHQRSTPTAGLIRIADEEIEKFFGEIQKNIPQCFKD KYNFDFDKDEPLEGRYEWARLNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	0	1
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	1.41	0.9014
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	3.87	0.8991
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	4.58	0.8885	Pt-ACR7.1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.016G086400 [exp]	6.48	0.9085
AT1G07120			unknown protein		Potri.009G073600 [exp]	9.74	0.8930
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	10.00	0.8931
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	10.00	0.8822
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	10.81	0.8783
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.007G014600 [exp]	13.26	0.8740
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	15.16	0.8640

Compare expression of checked genes

Potri.005G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.