Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09040 422 / 2e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 411 / 6e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 409 / 3e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 389 / 2e-120 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 379 / 7e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 385 / 8e-119 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT4G21300 383 / 1e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 384 / 2e-118 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 381 / 3e-118 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 384 / 5e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187800 [exp] 453 / 4e-143 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 429 / 2e-133 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 416 / 2e-130 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G074000 [exp] 412 / 3e-130 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 417 / 7e-130 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 414 / 9e-129 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 410 / 2e-126 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 401 / 5e-125 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G134300 [exp] 394 / 1e-122 AT5G08490 977 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015225 [exp] 426 / 2e-134 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016943 [exp] 406 / 7e-127 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 406 / 8e-127 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 407 / 2e-125 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 404 / 7e-125 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 401 / 2e-124 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 400 / 9e-124 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 393 / 3e-122 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 392 / 5e-122 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024220 [exp] 392 / 2e-121 AT1G74600 924 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G137900.1 pacid=42803034 polypeptide=Potri.005G137900.1.p locus=Potri.005G137900 ID=Potri.005G137900.1.v4.1 annot-version=v4.1 ATGGTCTCTCTTAAAAACAAACAAGAATCTGCTTCAATAATGTACAGTTCACTCAATTCAAGATCCAGCTGTAACTTCTCCAATATCTGCAAAAACACCA ACCACTTGAAGTCTTTGAAAGCTCTACTCATAGTTAACGGTCTAATACAACACAAGCTTTTGCTGAGACAATTTTTGGAGTCTTGTTTTAATTTGGGTTC TGTTGATTTAGCTCTCTCGACTTTCAATACAATTAAGAAGCCAAGCTTGTTGTTGCAAAACTTGATGATTAGGAGTCTAAGTAATAATGGGTTACACGAA AACGTCTTGTCTGTGTATAAAACTTGTCAGGTTTGGAATTGCCTATCTGATGATTTTACGTTTCCTTTTGTTATCAAGGCATGCTCAGTTCTTGGTGCTT TTGAGATTGGAAAAGAGATTCATTGTGCTGTGTTGAGAAATGGGTATGAGAGAAATGTTGTTATAGAGACTGCTTTGGTTGACTTTTATGGAAAGATTGG TCATTTAGGGACTGCACGCTCTCTGATTGATAGAAGTCCACAACCAGACTTGGTTTCTCTGAATGCTTTGATTTCTTGTTATTCTTTTCATGGGATTGAT CAACCAGTGTTTGAGGTTTTTAAGCTTATCTTCGCGGTGGGTTTGAAGCCTAATTTGAGTACTTTGGCTAGTGTAATTCCTGTGTGTACCAGATTGGGAT GTTTGGATACAGGTAAGTCTCTCCATGGATTTGCTGTGAAGTCTGGATTTCTTGCGAATGAGTTCTTGGTGCCTGCTTTAATTTCAATGTATGCTCGTGA TGTGTGTGTATCTAGTGCTATAAATATGTTTGAAGATGTAAAAAGGAAGAATGTTGCTGTTTGGAATGCTATGATTTCTGCTTGTACACAAAAGGATATG GCTTTTGAAGCATATGAGATGTTTCGACAAATGCTTCATGCTGATGTGCTGCCTAACTCAATTACTTTTGTGTCGGTCATTCCCTCATGTGAGGTTGCTG GTGGTATACTGTATGGTGAATCATTTCATGCTTGGGTGATAAAACACGGTTTAGAAAATCAAGTTTCTGTTTTGACAGCCCTTGTGTCCATGTATGCTAA GCTTGGAGAGATGCATAAAGCTGAAAATCTTTTTGATCGGATTTCCAATAGGAACCTCTTGTTATGGAATGTGATGGTGTCTGGGTATGTGCGCAATTGT CTATGGGATACAAGTCTCGCTGCATTTTGTGAAATGCAGCTTGGTGGATTTAGTCCAGATGCAGTCTCTATTGTTAGTGTTCTTTCTGCTTGTTCCTATC TGGAGGCTGTTTTGTTTGGTAAGTGTGCCCATGCATTTAGCATTAGAAAGGGGATTGATTCAAGCCCCAATGTTTCAAATGCTCTCTTGGCATTTTATTC TGATTGTAGACAACTCACCTCTTCTTTTAAGCTCTTTCACAAAATGCACACTAGGAATACTGTGTCGTGGAATACTTTGATATCTGGGTGTGTGCATAGT GGAGAAATGGAAAAGGCAGTTGACCTTGGTCACAGTATGCAGAAAGAGGGTGTGGCATTGGATTTGGTCACCCTAATAAGCGTTCTCCCTGTTTACTGTG ACAGGGACTATTTAGGTCATGGGATGACCCTTCATGGTCATGCGATAAAAAAAGGGTTTGCTTCTGATGTATCTTTGGTCAATGCACTTATCAGCACATA TTGTAAGTGTGGCGATCTTGATTCTGGGAGATTTCTTTTTGAAGTTATGTCAGAAAGGTGCGTAGTGTCTTGGAATGCCCTGATTACTGGCTTGCGGCAT CTCAACCTACAGAACGAGGCTTTGGTCCTTTTCAGTCAAATGACGGAGTATCAGAGGCCAAATTCTGTAACTCTGCTAAATGTATTGCCTTTGTGCTACA GCCATTTGCAGGGTAAGTCTGTCCATGCGTTTGCAATTAGAACACGAGTTTTACCGGAAACGCCTCTTGTTACTTCTCTGATTTACATGTATGCTAGATT TGAAAATATGAATTCATGTCTCTCGTTATTTGAAATAGGAACAAAAGACATACCAGTGTGGAATGCTATTATTTCTGTGCATATCCAAACAAAATATCCT GAAAAAGCAGTTTGCTTCTTCTATGATTTGCTTCGAATGGGTTTACAACCTGATAACATAACAGTTCTGAGTTTAGTTTCAGCATGCGCTCAACTAAATT TCTTGAGTCTTGCTCATTCTGTAATGGCCTATGTGATATGCAAGGGATTTGAGAAAGATTCTGCCGTTAGCAATGCCCTTATAGATATGTATGCAAGATG TGGAGACATTGTTACTGCTAAAAAGCTGTTTGAGGGCTTGATTGAAAAGGATGCTGTCTCTTGGAGTGTGATGATCAATGGATACTGTCTACATGGGGAC GGAAAAGCTGCCCTTGAAATTCTCTCCCAGATGCAGTTATCAGGAGTGATCCCTAATGTCATTGTATTTTCAACTATTTTATCAGCTTGCAGCCATGCTG GTTTAGTTGAGCAAGCTTGGATGGTCCTCAACTCTATGGTCGAAAATGGTATATCAGCAAGAATAGAGCACTATGCATGCCTGGTGGACCTGTTAGGGAG AAAAGGTCACTTGAAGGAGGCGTACAATGTCGTTAAGAAGCTACCTGGTAAACCTTCAGTTACCCTGCTTGAGTCGCTGTTGGGTGCCTGTAGCGTACAT GGCAACGTCGAAATTGGGGAGGAAATTAGTGGGCTGCTGTTTGAAATGGACCCAGATAATCCTGTTCCTTATGTGATTCTTTCCAATATCTATGCAGCAG CTGGTCGATGGGCAGACGCCAATAAATTGAGGTCAAACATAGACCGGAGACGACTGAGAAAAGCTGCTGGTTGCAGTCTTCTAATAAGCGAAAAAAGTGA CAACATTGTGGTAATGAAGGAAACCTAA
AA sequence Show only first row Show all	>Potri.005G137900.1 pacid=42803034 polypeptide=Potri.005G137900.1.p locus=Potri.005G137900 ID=Potri.005G137900.1.v4.1 annot-version=v4.1 MVSLKNKQESASIMYSSLNSRSSCNFSNICKNTNHLKSLKALLIVNGLIQHKLLLRQFLESCFNLGSVDLALSTFNTIKKPSLLLQNLMIRSLSNNGLHE NVLSVYKTCQVWNCLSDDFTFPFVIKACSVLGAFEIGKEIHCAVLRNGYERNVVIETALVDFYGKIGHLGTARSLIDRSPQPDLVSLNALISCYSFHGID QPVFEVFKLIFAVGLKPNLSTLASVIPVCTRLGCLDTGKSLHGFAVKSGFLANEFLVPALISMYARDVCVSSAINMFEDVKRKNVAVWNAMISACTQKDM AFEAYEMFRQMLHADVLPNSITFVSVIPSCEVAGGILYGESFHAWVIKHGLENQVSVLTALVSMYAKLGEMHKAENLFDRISNRNLLLWNVMVSGYVRNC LWDTSLAAFCEMQLGGFSPDAVSIVSVLSACSYLEAVLFGKCAHAFSIRKGIDSSPNVSNALLAFYSDCRQLTSSFKLFHKMHTRNTVSWNTLISGCVHS GEMEKAVDLGHSMQKEGVALDLVTLISVLPVYCDRDYLGHGMTLHGHAIKKGFASDVSLVNALISTYCKCGDLDSGRFLFEVMSERCVVSWNALITGLRH LNLQNEALVLFSQMTEYQRPNSVTLLNVLPLCYSHLQGKSVHAFAIRTRVLPETPLVTSLIYMYARFENMNSCLSLFEIGTKDIPVWNAIISVHIQTKYP EKAVCFFYDLLRMGLQPDNITVLSLVSACAQLNFLSLAHSVMAYVICKGFEKDSAVSNALIDMYARCGDIVTAKKLFEGLIEKDAVSWSVMINGYCLHGD GKAALEILSQMQLSGVIPNVIVFSTILSACSHAGLVEQAWMVLNSMVENGISARIEHYACLVDLLGRKGHLKEAYNVVKKLPGKPSVTLLESLLGACSVH GNVEIGEEISGLLFEMDPDNPVPYVILSNIYAAAGRWADANKLRSNIDRRRLRKAAGCSLLISEKSDNIVVMKET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	0	1
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	4.24	0.9101
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.013G041100 [exp]	4.89	0.8539
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	5.47	0.8927
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	7.74	0.8747
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	8.48	0.8885
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	10.00	0.8853
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.010G170050 [exp]	10.19	0.8537
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	10.24	0.8891
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	11.22	0.8817
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	11.95	0.8746

Compare expression of checked genes

Potri.005G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.