Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50360 275 / 3e-96 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT4G37010 236 / 1e-80 CEN2 centrin 2 (.1.2) AT5G37780 134 / 7e-41 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 134 / 7e-41 ACAM-4, CAM4 calmodulin 4 (.1.2) AT2G41110 132 / 7e-40 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 132 / 7e-40 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 132 / 7e-40 ACAM-3, CAM3 calmodulin 3 (.1) AT3G43810 132 / 1e-39 CAM7 calmodulin 7 (.1) AT5G21274 130 / 3e-39 ACAM-6, CAM6 calmodulin 6 (.1) AT3G22930 128 / 5e-38 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041000 [exp] 132 / 5e-40 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 132 / 1e-39 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.006G026700 [exp] 132 / 1e-39 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 132 / 1e-39 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 132 / 1e-39 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 131 / 1e-39 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 125 / 4e-37 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 124 / 8e-37 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 120 / 5e-35 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019349 [exp] 286 / 2e-95 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009353 [exp] 259 / 3e-88 AT3G50360 248 / 5e-84 CENTRIN 1, centrin2 (.1) Lus10041288 [exp] 132 / 1e-39 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 132 / 1e-39 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 132 / 1e-39 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 132 / 1e-39 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10039391 [exp] 129 / 2e-38 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10022589 [exp] 114 / 9e-33 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10021487 [exp] 106 / 1e-29 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10009176 [exp] 100 / 6e-27 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.005G138000.1 pacid=42804691 polypeptide=Potri.005G138000.1.p locus=Potri.005G138000 ID=Potri.005G138000.1.v4.1 annot-version=v4.1 ATGGCAAGTTTTTATAAAGGGCAAAATAGGAAGGATAAACCCAGAGGACGACATCATGGGTTGACTCAACAGAAGAGGCAGGAAATTAAAGAAGCTTTTG ATCTGTTTGATACTGATGGCTCAGGCACTATTGATGCCAAAGAGCTGAATGTTGCCATGAGGGCACTTGGCTTTGAGATGAACGAAGAGCAAATCAACCA AATGATTGCAGATGTTGACAAAGATGGCAGTGGTGCAATTGATTTTGATGAATTTGTGCATATGATGACAGCCAAGATTGGAGAAAGGGACACAAAGGAA GAGCTTTCAAAAGCATTCCGCATTATTGACCATGATAAAAATGGAAAAATTTCTGTAGGTGACATCAAGCAAATAGCCAAGGAGCTTGGCGAAAGCTTCA CTGAAAGAGAGATTCAAGAGATGGTTGAAGAAGCTGATCAAGATCGTGATGGAGAAGTGGGTGTCGACGATTTCATGAGGATAATGAGGAGGACGACATA TGGGTACTAG
AA sequence Show only first row Show all	>Potri.005G138000.1 pacid=42804691 polypeptide=Potri.005G138000.1.p locus=Potri.005G138000 ID=Potri.005G138000.1.v4.1 annot-version=v4.1 MASFYKGQNRKDKPRGRHHGLTQQKRQEIKEAFDLFDTDGSGTIDAKELNVAMRALGFEMNEEQINQMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKE ELSKAFRIIDHDKNGKISVGDIKQIAKELGESFTEREIQEMVEEADQDRDGEVGVDDFMRIMRRTTYGY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Potri.005G138000 [exp]	0	1
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	2.82	0.7822
AT5G46020			unknown protein		Potri.011G060800 [exp]	3.74	0.7799
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	7.48	0.7537	RAB11.4
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	24.49	0.7218
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	26.32	0.6899
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.017G075200 [exp]	45.38	0.6830
AT3G17950			unknown protein		Potri.012G045700 [exp]	54.77	0.7383
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.011G023000 [exp]	60.26	0.6579
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466400 [exp]	60.56	0.7378
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	75.29	0.7233

Compare expression of checked genes

Potri.005G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.