Plant FIBer expression Database

Potri.005G138200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G36980 491 / 5e-170 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G044100
[exp]
632 / 0 AT4G36980 489 / 3e-169 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009350
[exp]
318 / 4e-101 AT4G36980 358 / 2e-117 unknown protein
Lus10019346
[exp]
198 / 4e-57 AT4G36980 297 / 1e-95 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09750 DRY_EERY Alternative splicing regulator
Representative CDS sequence
>Potri.005G138200.2 pacid=42803305 polypeptide=Potri.005G138200.2.p locus=Potri.005G138200 ID=Potri.005G138200.2.v4.1 annot-version=v4.1
ATGTGGCACGAAGCGAGAAGATCAGAGAGGAAAGTACACGACTTGATGGACGCCGCTCGAAAGAGAGCGCAACGACGAGCCGTTTATTTGGCGAAGAGAA
GAGGCGATCCAATGCAATCTATTCAAGTTATCGGCAATCGATCTCGCATGTATCGTGACGATGGTCTCTATCAGGCCACACAAGACCAGCAAGGCCTGAT
ACCTTGGAATGGCAAACAGGATGTTCTAATTGACAGATTTGATGGTCGTGCTTTACTTGATTTTATTCGGGAGTTTGGGACCCGACGGGCCCCACAGAAA
TCGGAAGAAGAAGAAGAACTAGAAGAGTTTGTTAATTTTCAGCGTTATCGGGATTTAATTAAACATCGACGTAGAGGATTTACTGATGAAGAGGGTTTGC
AACATGTACATCAAGAGCTTGAGGCAAAGCTTACTGCCTCATTTGCTTCAAACAGTAATTCTCAGCCACAACAACCTCCTGCTAGCAAAGGTCCTTATTC
ACAAGTTGGCTTTTCTTATGATGGGGATGGAAAAGAGGAATTCCATTTTTCAGATGGTGATCACAGTGAAAGTGAAGATGACGATGATGATGATGAGGAT
TTTAATAGCGATGACAGCAATGATGAAGGAATGGAGAGAATAGCAAAAGAATTTGGAGTGAAAAGGTATGGTTGGCTTGTTTACATGGATAAAAAAACAA
AAGAAGAAGAGAAAAGACAGAAGGAAGTGATCAAAGGTGATCCTGCAATTAGGAAATTGAGTCGCAAGGAAAGAAGGAAAGCTTCTCAGATAGAAAGGGA
AAGAGAGAGAGAAGCTGCTAGGATAACAGGAACAGGAGTGCTCCATCATGATCCCTACCGTGAATCTAGACGAAGTCCAACTTATGAAGCTTATTCTCGC
TCCAGAAAAGTGAGATCAAGATCACGCTCATTTTCACCATCACACTCAAGGCGTTATACTCGTGGAGGGCATCCTGATGAAGTTCACCGTAGTAAACCAA
GGACTCCTAAGATAGAATACATCACAGAATTTGGGGCCCCTGGTGACAGGGATGAGCCAAAGCGTGAAGGATATTCTCCACCACCATCTCCTCCATCACA
GGCTGATTTGTTAAACCGGCCATCATCCTGTCACATACTTGAAGCACTGCATATTGATCCTGCATCTGGTGTGTCCCTTGATAGTGATAAGAGCACAAAA
GTATCAAAATCAGCAGTAAGCACACCATCAGGATTAGCAAAATTAACCAAGGCAAGTACTTCTGGGGGACCTTTGAAGCAGCAACAAGGAGAGAAAAAAG
AAACTCCTCAGGAGAGACTCAAAAGGATCATGAGCAAACAGCTAAACAAACAAATTAAAAAAGATACCGCTGCTGAAACGGCCAAGAAACGAGAACAGGA
GCGCCAGAGGCAGGCGAAACTTGCAGAAACAAATCAACTTAGTCGATATAGACGTCGCAGCCGTAGCCGGAGCTACAGCAATTCTCCACCAAGAAGATAC
AGGTCCAGTAGAAGTCGAAGTCGAAGTAGGAGTTCTCGAAGATATCATTCCCGCTCCCGCTCCCAATCCCGATCCCGATCCCACTCCCACTCCCGAACAC
ACACCCAGTCCCGCTCTCCTTGTTCCCGCTCACCAAGGGTAAGAAGCCGATGA
AA sequence
>Potri.005G138200.2 pacid=42803305 polypeptide=Potri.005G138200.2.p locus=Potri.005G138200 ID=Potri.005G138200.2.v4.1 annot-version=v4.1
MWHEARRSERKVHDLMDAARKRAQRRAVYLAKRRGDPMQSIQVIGNRSRMYRDDGLYQATQDQQGLIPWNGKQDVLIDRFDGRALLDFIREFGTRRAPQK
SEEEEELEEFVNFQRYRDLIKHRRRGFTDEEGLQHVHQELEAKLTASFASNSNSQPQQPPASKGPYSQVGFSYDGDGKEEFHFSDGDHSESEDDDDDDED
FNSDDSNDEGMERIAKEFGVKRYGWLVYMDKKTKEEEKRQKEVIKGDPAIRKLSRKERRKASQIEREREREAARITGTGVLHHDPYRESRRSPTYEAYSR
SRKVRSRSRSFSPSHSRRYTRGGHPDEVHRSKPRTPKIEYITEFGAPGDRDEPKREGYSPPPSPPSQADLLNRPSSCHILEALHIDPASGVSLDSDKSTK
VSKSAVSTPSGLAKLTKASTSGGPLKQQQGEKKETPQERLKRIMSKQLNKQIKKDTAAETAKKREQERQRQAKLAETNQLSRYRRRSRSRSYSNSPPRRY
RSSRSRSRSRSSRRYHSRSRSQSRSRSHSHSRTHTQSRSPCSRSPRVRSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G36980 unknown protein Potri.005G138200
[exp]
0 1
AT4G36980 unknown protein Potri.007G044100
[exp]
1.41 0.9203
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.005G125500
[exp]
1.73 0.9085
AT5G62760 P-loop containing nucleoside t... Potri.015G064600
[exp]
4.00 0.8880
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.010G172100
[exp]
4.24 0.8806
AT2G44900 ARABIDILLO-1, A... F-box Armadillo protein 1, ARA... Potri.002G137100
[exp]
4.89 0.8781
AT1G05350 NAD(P)-binding Rossmann-fold s... Potri.012G097700
[exp]
4.89 0.8995
AT2G47020 Peptide chain release factor 1... Potri.014G114000
[exp]
5.83 0.8398
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
6.32 0.8803
AT1G19485 Transducin/WD40 repeat-like su... Potri.006G036601
[exp]
6.48 0.8748
AT3G17310 DRM3, AtDRM3 domains rearranged methyltrans... Potri.010G152200
[exp]
7.74 0.8745

Potri.005G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.