Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67020 520 / 0 unknown protein AT3G50340 503 / 9e-179 unknown protein AT2G22790 106 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044200 [exp] 672 / 0 AT5G67020 537 / 0.0 unknown protein Potri.007G008900 [exp] 156 / 5e-44 AT2G22790 153 / 2e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019345 [exp] 223 / 4e-72 AT5G67020 248 / 2e-82 unknown protein Lus10009357 [exp] 145 / 3e-42 ND 167 / 2e-51 Lus10011589 [exp] 150 / 3e-41 AT2G22790 166 / 4e-48 unknown protein Lus10011575 [exp] 138 / 7e-37 AT2G22790 160 / 8e-46 unknown protein Lus10019249 [exp] 129 / 9e-34 AT5G67020 141 / 2e-38 unknown protein Lus10019344 [exp] 103 / 2e-27 AT5G67020 96 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G138300.1 pacid=42802609 polypeptide=Potri.005G138300.1.p locus=Potri.005G138300 ID=Potri.005G138300.1.v4.1 annot-version=v4.1 ATGGTAGACGTGGACCGGAGAATGACCGGCCTTAACCCGGCCCATATTGCCGGTTTACGCCGTCTCTCTGCTCGAGCCGCTGCCCCATCAACTACAACAA CACTCCCAGCTCGCAACAGCCTCCTTTCTTTCTCTTCATTAGCTGATAAAGTAATAACCCATTTGCGCAATTCTGGTATCCAAGTCCAGCCCGGTCTTAC CGATTCTGAATTCGCTCGATCCGAAGCTGAGTTCGGCTTCGCTTTCCCACCTGACCTCCACGCCGTCCTCTCTGCTGGCCTCCCTGTCGGCGCAGGATTC CCCGACTGGCGTTCTGCAGGTGCACGCCTCCACCTACGCGCCTCTCTAGACCTTCCTATCGCCGCTATATGCTTCCAAATTGCACGAAACACTTTATGGT CGAAATCTTGGGGCCCGAGACCTTCCGACCCGGAAAAAGCCTTACGGATCGCTAGAAATTCGCTTAAAAGAGCCCCTCTTTTGATTCCCATTTTTAACCA TTGTTACATTCCTTGTCAACCATCATTAGCGGGTAACCCGATTTTCTTTGTCGATGAAAATCGGATCTTTTGTTGCGGGTTGGACCTATCAGACTTTTTT GACCGTGAATATCTTTTCCGGAGCTCGAAATCTGACCCGATTATTATAAAAAAGCAAAAGTCTGTTAGTGAGAAATCTACTGGTTTATCCAATAATCCCT CGCGGAAGAGTTTGGATACGGGTCTGGTAAACGGGTCGAGGACACCCAGATGGGTAGAGTTTTGGAGTGACGCGGTGGTGGACAGGAGAAGGAGGAATTC AGCATCGTCTTCGTCGGGATCTTCGTCGCCGGAACGGTTTTTTGAGATGCCAAGATCCGAAATACCGAGATGGGTGGGGGATTATATACAGCAAATCGGG TCGGTTTTGAGAGAAGGCGGGTGGAGGGAGTCCGACATCGATGAAATGGTTCAAGTATCAGCTTCGGGTTTCTTTGAGGGTGAAATGGTAATTTTAGATA ATCAAGCAATCCTAGATGCTTTGCTTTTGAAAGTGGATCGGTTTTCGGACTCGCTCCGCAAAGCTGGGTGGAGCTCCGAGGAAGTATCGGATGCTTTGGG GTTTGATTTTAGAGCAGAGAAGGAGAGGAAACCGGTGAAAACATTGTCGCCTGAACTTGTTGAGAAAATTGGGAAATTGGCTGAGTCGGTTTCCCGGTGA
AA sequence Show only first row Show all	>Potri.005G138300.1 pacid=42802609 polypeptide=Potri.005G138300.1.p locus=Potri.005G138300 ID=Potri.005G138300.1.v4.1 annot-version=v4.1 MVDVDRRMTGLNPAHIAGLRRLSARAAAPSTTTTLPARNSLLSFSSLADKVITHLRNSGIQVQPGLTDSEFARSEAEFGFAFPPDLHAVLSAGLPVGAGF PDWRSAGARLHLRASLDLPIAAICFQIARNTLWSKSWGPRPSDPEKALRIARNSLKRAPLLIPIFNHCYIPCQPSLAGNPIFFVDENRIFCCGLDLSDFF DREYLFRSSKSDPIIIKKQKSVSEKSTGLSNNPSRKSLDTGLVNGSRTPRWVEFWSDAVVDRRRRNSASSSSGSSSPERFFEMPRSEIPRWVGDYIQQIG SVLREGGWRESDIDEMVQVSASGFFEGEMVILDNQAILDALLLKVDRFSDSLRKAGWSSEEVSDALGFDFRAEKERKPVKTLSPELVEKIGKLAESVSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67020			unknown protein		Potri.005G138300 [exp]	0	1
AT1G69030			BSD domain-containing protein ...		Potri.008G111900 [exp]	10.24	0.6192
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	12.96	0.5803
AT1G31460			unknown protein		Potri.001G128600 [exp]	21.07	0.6195
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Potri.002G004800 [exp]	72.66	0.5383	(),CHB903,Pt-SWI3.1,of
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	91.19	0.4783
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.002G040100 [exp]	97.67	0.5207
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.001G471500 [exp]	108.44	0.5058
AT1G24310			unknown protein		Potri.010G059100 [exp]	171.89	0.4797

Compare expression of checked genes

Potri.005G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.