Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36970 230 / 1e-71 Remorin family protein (.1) AT1G45207 207 / 1e-61 Remorin family protein (.2) AT1G53860 64 / 5e-11 Remorin family protein (.1) AT2G02170 63 / 1e-10 Remorin family protein (.1.2) AT1G67590 62 / 2e-10 Remorin family protein (.1.2) AT1G30320 62 / 4e-10 Remorin family protein (.1) AT3G57540 53 / 1e-07 Remorin family protein (.1) AT2G41870 52 / 2e-07 Remorin family protein (.1) AT3G61260 49 / 2e-06 Remorin family protein (.1) AT5G23750 44 / 6e-05 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027900 [exp] 307 / 2e-99 AT1G45207 442 / 1e-149 Remorin family protein (.2) Potri.002G125200 [exp] 293 / 1e-93 AT1G45207 384 / 9e-127 Remorin family protein (.2) Potri.007G044350 [exp] 183 / 1e-56 AT4G36970 100 / 4e-25 Remorin family protein (.1) Potri.001G163000 [exp] 71 / 3e-13 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.008G144300 [exp] 70 / 7e-13 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.008G178300 [exp] 63 / 9e-11 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G098000 [exp] 58 / 5e-09 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.010G056800 [exp] 58 / 5e-09 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.006G053200 [exp] 52 / 2e-07 AT3G57540 196 / 2e-61 Remorin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039007 [exp] 305 / 2e-101 AT4G36970 213 / 4e-65 Remorin family protein (.1) Lus10027302 [exp] 298 / 1e-98 AT4G36970 215 / 8e-66 Remorin family protein (.1) Lus10042649 [exp] 305 / 6e-98 AT1G45207 424 / 2e-141 Remorin family protein (.2) Lus10005708 [exp] 301 / 9e-97 AT1G45207 454 / 2e-154 Remorin family protein (.2) Lus10009750 [exp] 276 / 1e-87 AT1G45207 445 / 8e-151 Remorin family protein (.2) Lus10010227 [exp] 248 / 1e-76 AT1G45207 441 / 6e-149 Remorin family protein (.2) Lus10003936 [exp] 65 / 5e-11 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037454 [exp] 63 / 2e-10 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10038522 [exp] 57 / 7e-09 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10026302 [exp] 55 / 2e-08 AT3G57540 209 / 1e-67 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.005G138500.1 pacid=42802502 polypeptide=Potri.005G138500.1.p locus=Potri.005G138500 ID=Potri.005G138500.1.v4.1 annot-version=v4.1 ATGAAGCAGAATCTAATATCTTCCCAGAGTTTAGGGGCATTTCCTAGTCCGGGAGGTGCCAGATATCAAGAAAATAAAGGATGGAGTTCAGAGAGGATTC CACACCCTTCATCAGGCAGCGGCAGGAGGCATATAAGTGCTTTGACTCCGTTTTATAGTGGCCGGGCTTTGCCTTCTAAATGGGAAGATGCAGAGAGGTG GATATGTAGTCCAGTTTTGGGCTATGGTGTTGCTAAAAGTTCTCAGTGCCATCCTTTAAGGCGTGCCAAGTCAAAAAGTGGGCCTATTAATCTGCCTCCT GGGATTGGTTACTATCATAATTGTTCACCGTCAATGGGGGTTATTGATGGTGGGATTGGGAGGAATTTCATGGTGAATTCTCCGTTTTCAACTGGAGTCT TGATGCCTAATGGGGTTGGTGCTCATTGTAGTGGAAGTGGAGGTGGAGGTGGGCAAGGTCATGTGGAACGCTTGGCTAGTGCTCTTAGTCGGTCTGATTT GGCGAGCGAACCTTCATCTTCCAGCTCTCAAGATGAGAGACCTGAAGGCGTTGATGATGGAAACAACACAGTTGATCGTATCATTTCAAGAAGGGATATG GCAACACAAATGAGCCCTGAGGGGAGCACCCACTCTTCTTGTAGAGGAAGGTCCTCTTCTCCTCCCTCTACAGATCCTGTACTGGAGCCACAAAGTGACC ATCCTGCTAAATTGGAAATCAGGGAAGTCCAGGTAGATAAAAGAGCCACTGTGATTAGGTGGTCCAAAAGGCCTGGTTCTCGCAGAATTAAGAGGGGACA GCCAGATGTCGAGGAATTCAATCCAAATGCTGCTGACGCTCACTCCTCATCTTGGGATATTTCAGAGGAAGTATCAGACTTTTCAAAGTTGCAAAGAGAG GAAGCCAAGATCACTGCATGGGAGAACTTGCAGAAAGCAAGAGCAGAGGCTGCAATAAGAAAACTCGAGATGAAACTGGAAAAGAAGAGATCATCATCAA TGGATAAAATAATGAACAAGCTAAGAATTGCTCAGATGAAAGCTGAAGAAATGAGAAGCTCGATGTCAATCAGGCAGGACCAACAAGTTTCCCAGAAATC CCACAAGATCAAGCTCTTTCATAAGCGTGCTCGTTTGACTTCCTTGGGTAGTTGCTTTACCTGCCATGCTTTTTAA
AA sequence Show only first row Show all	>Potri.005G138500.1 pacid=42802502 polypeptide=Potri.005G138500.1.p locus=Potri.005G138500 ID=Potri.005G138500.1.v4.1 annot-version=v4.1 MKQNLISSQSLGAFPSPGGARYQENKGWSSERIPHPSSGSGRRHISALTPFYSGRALPSKWEDAERWICSPVLGYGVAKSSQCHPLRRAKSKSGPINLPP GIGYYHNCSPSMGVIDGGIGRNFMVNSPFSTGVLMPNGVGAHCSGSGGGGGQGHVERLASALSRSDLASEPSSSSSQDERPEGVDDGNNTVDRIISRRDM ATQMSPEGSTHSSCRGRSSSPPSTDPVLEPQSDHPAKLEIREVQVDKRATVIRWSKRPGSRRIKRGQPDVEEFNPNAADAHSSSWDISEEVSDFSKLQRE EAKITAWENLQKARAEAAIRKLEMKLEKKRSSSMDKIMNKLRIAQMKAEEMRSSMSIRQDQQVSQKSHKIKLFHKRARLTSLGSCFTCHAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36970			Remorin family protein (.1)		Potri.005G138500 [exp]	0	1
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Potri.006G097600 [exp]	16.43	0.8012
AT4G27070		TSB2	tryptophan synthase beta-subun...		Potri.001G420300 [exp]	42.21	0.7931
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154500 [exp]	55.51	0.7296
AT5G48480			Lactoylglutathione lyase / gly...		Potri.002G251200 [exp]	58.86	0.7087
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	72.69	0.7655	FDH1
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	80.23	0.7697	LIP2.2
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.019G118600 [exp]	118.59	0.7612
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G436500 [exp]	122.67	0.7369
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.015G031300 [exp]	131.25	0.7354
AT1G42960			unknown protein		Potri.007G064100 [exp]	151.82	0.7092

Compare expression of checked genes

Potri.005G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.