Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36960 540 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 138 / 7e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 139 / 1e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 135 / 6e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 128 / 3e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 125 / 9e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 126 / 1e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 124 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 117 / 4e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 106 / 9e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044400 [exp] 719 / 0 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 143 / 5e-39 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 140 / 4e-37 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 139 / 4e-37 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 139 / 5e-37 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G040900 [exp] 138 / 5e-37 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G015700 [exp] 137 / 2e-36 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 132 / 1e-34 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 132 / 1e-34 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009360 [exp] 573 / 0 AT4G36960 529 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10019341 [exp] 535 / 0 AT4G36960 471 / 7e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 140 / 3e-38 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 140 / 3e-37 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 139 / 2e-36 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 137 / 3e-36 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 136 / 6e-36 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 137 / 9e-36 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 134 / 4e-35 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 133 / 1e-34 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G138600.9 pacid=42804953 polypeptide=Potri.005G138600.9.p locus=Potri.005G138600 ID=Potri.005G138600.9.v4.1 annot-version=v4.1 ATGAGCCAAAAGCTTGTGATTCTGGGTATTCCATGGGAAATTGATACCGAGGGTCTGAGACAATACATGAGCAAGTTTGGTGAATTAGAGGATTGTATTG TTATGAAGGAGCGGTCATCAGGTCGATCTCGTGGTTTTGGATATGTGACTTTTGTATCCGCTGAAGATGCTAAGGCTGTACTATCAGGTGAACACTTTCT TGGTAAAAGAATGCTGGAAATTAAAGTGGCTACTCCAAAGGAGGAGATGCGAGCACCAACAAAAAAAGCCACAAGGATATTTGTGGCCAGGATTCCACCA TCTGTGACAGAAACTACTTTTCGAAGTCACTTTGAGAAATATGGGGAGATAATTGACCTATACATGCCAAAAGATCATAGCTCGAAAGCACATCGGGGAA TTGGGTTCATCACATATGCAAGTGCAGATTCTGTGGACAGCTTGATGGCTGAAACTCATGAATTGGGAGGCTCTACTGTAGTTGTAGATCGAGCAACGCC TAAGGAAGATGACTTTAGGCCTATAGCAAGAACAGCACCTGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCTACCAGATATGCAGCTCTTGGT GCTCCCACCTTGTATGATCATCCTGGACCATTCTATGGAAGAGGGGAATCATCTAGAGGAATGGGCAAAAAGATCTTTGTTGGAAGGCTTCCTCAGGAAG CAAGCACCGAAGATTTGCGCCAGTATTTTGGTAGATTTGGCCACATAATAGATGTATATGTTCCTAAGGATCCCAAGAGAACTGGCCATAGAGGTTTTGG ATTTGTAACCTTTGCTGAAGATGGTGTTGCGGATCGTGTATCTCGAAGATCTCATGAGATTTGTGGACATCAGGTTGCAATAGATTCAGCCACACCTATT GATGATGCTGGTCCAAGTGGAAATTTCATGATGAGCGCTCCTGAACCTTTTGGGGGTTATGGTGGTCCCATGCGCAACTTTGGCAGGATGTATGGAACCC TGGATTATGATGATGCGGGTGCATATATGGTTCCTTCTAAATGGGGTTATGGTATGGGGAGTGCAAGGCCTTCAAGAGCAGATTGGAGGTACAGGCCTTA CTAG
AA sequence Show only first row Show all	>Potri.005G138600.9 pacid=42804953 polypeptide=Potri.005G138600.9.p locus=Potri.005G138600 ID=Potri.005G138600.9.v4.1 annot-version=v4.1 MSQKLVILGIPWEIDTEGLRQYMSKFGELEDCIVMKERSSGRSRGFGYVTFVSAEDAKAVLSGEHFLGKRMLEIKVATPKEEMRAPTKKATRIFVARIPP SVTETTFRSHFEKYGEIIDLYMPKDHSSKAHRGIGFITYASADSVDSLMAETHELGGSTVVVDRATPKEDDFRPIARTAPGGYGAYNAYISAATRYAALG APTLYDHPGPFYGRGESSRGMGKKIFVGRLPQEASTEDLRQYFGRFGHIIDVYVPKDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPI DDAGPSGNFMMSAPEPFGGYGGPMRNFGRMYGTLDYDDAGAYMVPSKWGYGMGSARPSRADWRYRPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.005G138600 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471700 [exp]	3.46	0.6826	ARP8.2,ARP908
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	4.00	0.6862
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.009G125200 [exp]	4.69	0.6644
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	5.19	0.6665
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	11.66	0.6681
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	12.12	0.6682
AT4G03020			transducin family protein / WD...		Potri.010G026800 [exp]	14.14	0.6741
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	18.33	0.6702
AT5G19150			pfkB-like carbohydrate kinase ...		Potri.008G203600 [exp]	22.58	0.6737
AT1G30540			Actin-like ATPase superfamily ...		Potri.011G164500 [exp]	29.15	0.6648

Compare expression of checked genes

Potri.005G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.