Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42930 434 / 5e-149 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 409 / 4e-139 alpha/beta-Hydrolases superfamily protein (.1) AT5G67050 406 / 5e-138 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 390 / 9e-132 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT3G14360 347 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 52 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 51 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G44810 50 / 1e-06 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT5G14930 46 / 2e-05 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT2G31100 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044500 [exp] 490 / 3e-171 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 474 / 8e-165 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 467 / 3e-162 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 452 / 1e-156 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 355 / 4e-117 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 344 / 9e-113 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 54 / 9e-08 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 53 / 2e-07 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 48 / 1e-05 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005092 [exp] 421 / 9e-144 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10009361 [exp] 401 / 7e-136 AT5G42930 478 / 4e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 400 / 3e-135 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 392 / 2e-132 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 357 / 4e-118 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 350 / 2e-115 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 57 / 2e-08 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 53 / 2e-07 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 47 / 2e-05 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 47 / 2e-05 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.005G138800.1 pacid=42803623 polypeptide=Potri.005G138800.1.p locus=Potri.005G138800 ID=Potri.005G138800.1.v4.1 annot-version=v4.1 ATGTCAATGACTTCTGCAAATTTTCCTGGCAATTATTTGGTGTTGCGACCTCAAGAAGTGAGTTATCTGAATGTGTTTCGTATACTATGGAACGACGACA TCGAGAAAAAAGCATTTGTGGACTTCCCAGATGGAAAGGTGGAGAATCTCCATCGTCGATGGCTTATATTTCTCTCTCTGCTATCACAAAAAATCCTGCA ATCTATAGCCAGGCCAATGGCATCGTTTGGATCAAGAGTTGAGATGTGGCTAAACCTTATATCATGTAACCGTAATATTTTTGTGCTCTTCATAAATTAT TTACGAGGTAGGGTGGAAAGACCAGTTAAGGAATCAAAAACTTTCTTATCATTTGCTGGACATTTAGACAAGCGTGTGGATTTAGACAAGAATATCAAGC ATGGTGATAGCAGATACTACAGTGCACTCTCTGTAATGGCTGCAAAGGTAGCTTATGAGAACAAAGCCTTTGTCGAAAATGCAGTTAGAAATCACTGGAA GATGGAGTTAATTGGATACTATGATTTTTGGAATGATTTTCAACAAAAACGTACAACACAAGGCTTCATGTTTCATGATAAAAATGCAGACCCTGACATA ATTGTCGTGGCCTTTAGAGGTACGGAAGCCTTTGATGCGGATGATTGGTGTTCTGATTTTGATATCTCCTGGTATGAGTTTCCTGGCATAGGAAAAATTC ATGGTGGCTTTATGAAAGCATTAGGTTTATCAATGCGTCAAGGCTGGCCTCCGGAATTTAGACAAGGCGCCGATGGCCAACCGATAGCTTACTACACTAT AAGAGAGAAATTGAAACAACTTCTTAAACAAAATAAAAAGACAAAATTTATATTGACTGGTCACAGCATGGGTGGCGCAATTGCAACTCTCTTCCCAGCT GTTCTAGCAATGCATAAAGAGACATGGTTATTAGAGAGGCTGGAAGGCGTGTATACATTTGGTCAGCCAAGAGTTGGAGATGGGGAATTCAAGAGGTTCA TGGAGAGCCAGATGCAAAAGCACAAGTTTAAGTACGTGAGATTCGTTTATTGTAATGATGTGATTACCAGGTTGCCCATAGATGATTCGACATTTCTTTT CAAGCATTTTGGTACATGCGTCTACTATAATAGCTGTTATTATGGGAAGATAGTTTCAGAGGAACCACACAAGAACTATATATCGGTATTTGCTGCTATA CCGAGGTTTCTAAATGCATTATGGGAGCTAGTAAGAGGCTTCATTTTACCCTACAGAAAGGGGGCCGATTATAAAGAACCTTGGTTGCTGATACTGCTTA GATGGTATGGACTGATACTCCCAGGTTTGTCAGCTCACACTCCACAAGATTACGTTAATTTAACACGGTTGGGACCTGACACTATATACCACCGTCTTCA AGACCCAAAATTTGGAAGTGTCTCTAATTCGGATGCAACAAAAGATTGA
AA sequence Show only first row Show all	>Potri.005G138800.1 pacid=42803623 polypeptide=Potri.005G138800.1.p locus=Potri.005G138800 ID=Potri.005G138800.1.v4.1 annot-version=v4.1 MSMTSANFPGNYLVLRPQEVSYLNVFRILWNDDIEKKAFVDFPDGKVENLHRRWLIFLSLLSQKILQSIARPMASFGSRVEMWLNLISCNRNIFVLFINY LRGRVERPVKESKTFLSFAGHLDKRVDLDKNIKHGDSRYYSALSVMAAKVAYENKAFVENAVRNHWKMELIGYYDFWNDFQQKRTTQGFMFHDKNADPDI IVVAFRGTEAFDADDWCSDFDISWYEFPGIGKIHGGFMKALGLSMRQGWPPEFRQGADGQPIAYYTIREKLKQLLKQNKKTKFILTGHSMGGAIATLFPA VLAMHKETWLLERLEGVYTFGQPRVGDGEFKRFMESQMQKHKFKYVRFVYCNDVITRLPIDDSTFLFKHFGTCVYYNSCYYGKIVSEEPHKNYISVFAAI PRFLNALWELVRGFILPYRKGADYKEPWLLILLRWYGLILPGLSAHTPQDYVNLTRLGPDTIYHRLQDPKFGSVSNSDATKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.005G138800 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.013G133900 [exp]	1.00	0.9729
AT5G45480			Protein of unknown function (D...		Potri.006G011100 [exp]	1.73	0.9579
AT3G50180			Plant protein of unknown funct...		Potri.016G039800 [exp]	2.23	0.9416
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	4.00	0.9622
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	4.24	0.9408
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054800 [exp]	8.48	0.9542
AT5G45480			Protein of unknown function (D...		Potri.006G013500 [exp]	8.48	0.9294
AT5G45540			Protein of unknown function (D...		Potri.012G018400 [exp]	10.24	0.9389
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.006G097300 [exp]	10.48	0.8885
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	13.03	0.9211

Compare expression of checked genes

Potri.005G138800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.