Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67080 330 / 4e-112 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 317 / 2e-107 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G50310 314 / 6e-106 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G55090 199 / 5e-60 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT2G32510 194 / 6e-59 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G07150 196 / 2e-58 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT4G26890 194 / 4e-58 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G05100 191 / 4e-58 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G30040 191 / 9e-57 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT1G63700 181 / 8e-51 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044800 [exp] 530 / 0 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 503 / 4e-180 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.003G184200 [exp] 248 / 1e-79 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.001G042400 [exp] 237 / 3e-75 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.004G007700 [exp] 211 / 2e-64 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.006G181000 [exp] 202 / 3e-62 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.011G007400 [exp] 206 / 4e-62 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.009G073200 [exp] 203 / 7e-61 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 200 / 4e-60 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012668 [exp] 350 / 9e-120 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10019340 [exp] 313 / 3e-105 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10021551 [exp] 202 / 1e-60 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10030042 [exp] 201 / 1e-60 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10022951 [exp] 192 / 3e-57 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10035284 [exp] 188 / 5e-56 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10039141 [exp] 177 / 7e-53 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10009364 [exp] 172 / 8e-52 AT5G67080 168 / 1e-50 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10034285 [exp] 174 / 1e-51 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10010519 [exp] 181 / 3e-51 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G139300.1 pacid=42805024 polypeptide=Potri.005G139300.1.p locus=Potri.005G139300 ID=Potri.005G139300.1.v4.1 annot-version=v4.1 ATGGAGTGGGTAAGAGGGCAGTGTATTGGATCCGGCAGTTCTTCTAGGGTTCATCTTGCAACCCTCAAACAACATCCTTCGGTGCTGGCAGTGAAGTCTT GCGCAGAATCTGACTCTAGTCTACTCGAGAACGAGAGGGAAGTTGTCACGGAGCTTGGTTATTGTCCACAAATCATCCAATATTTCGGCGACAGCCATAC CGTTGAAGAAAAGAACGAGCGTCTATACAATCTGTTGTTGGAGTACGCTAAAGGAGGCAGTTTATCACAAAAACTCAACAAATTTGGCTGCTTTCAAGAG CGAGATGTCAAAGATTATGCAAGATCGATTCTTAAGGGTCTGCGTCATATCCACGCCAAGGGTTTTGTTCACTGTGACTTGAAACTTGATAACATATTGT TGTTTGAGAATGAGGAAGTAAAAATTGCAGATTTTGGGTTGGCAAGGAAAGCAGGAAAGGCACAGGGGAGAGCGGAAATTAGAGGGACTCCTCTATACAT GGCCCCCGAGTCAGTGAATGACAATGTGTACGAATCAGGGGTTGATATTTGGGCCCTTGGGTGTGCTGTTATTGAGATGTTGACAGGGAAACCAGCGTGG AGTTGCAAACCAGGGACCAATATGTTTGTATTGTTGATCAGAATTGGGAAAGGTGATGAATTGCCAACAATACCTGAAGAATTGTCCCAACAAGGCAAAG ATTTTCTGTCTAAGTGTTTTGTCAAAGATCCTAAACGAAGATGGACTGCTGACATGCTTCTGGAACATCCTTTTGTTGCTGATCAAGGGAAGGGCACTGT TCCATTGAGAGAAGAAATTGAAGTGTCATCAACTTCACCAAGATGCCATTTTGATTTCCCAGATTGGGTTTCAATTCAATCACCATCACCTAGATCAGAG TTTTTGTCCGATGATGGAGTGGGATTAGTCTTTCCTTCATTAAATTCTTCTTCTTGGATCTCAGCTTCAGATAGAATCCGGCAACTGGCGAGTGATCAAT GTTGCAATTGGTCGGATTCTGGATTTTGGGTCGCTGTTAGGTGA
AA sequence Show only first row Show all	>Potri.005G139300.1 pacid=42805024 polypeptide=Potri.005G139300.1.p locus=Potri.005G139300 ID=Potri.005G139300.1.v4.1 annot-version=v4.1 MEWVRGQCIGSGSSSRVHLATLKQHPSVLAVKSCAESDSSLLENEREVVTELGYCPQIIQYFGDSHTVEEKNERLYNLLLEYAKGGSLSQKLNKFGCFQE RDVKDYARSILKGLRHIHAKGFVHCDLKLDNILLFENEEVKIADFGLARKAGKAQGRAEIRGTPLYMAPESVNDNVYESGVDIWALGCAVIEMLTGKPAW SCKPGTNMFVLLIRIGKGDELPTIPEELSQQGKDFLSKCFVKDPKRRWTADMLLEHPFVADQGKGTVPLREEIEVSSTSPRCHFDFPDWVSIQSPSPRSE FLSDDGVGLVFPSLNSSSWISASDRIRQLASDQCCNWSDSGFWVAVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Potri.005G139300 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.004G200400 [exp]	1.00	0.9632
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.007G113000 [exp]	2.00	0.9510
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G150800 [exp]	2.82	0.9478	ERF5
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.002G119300 [exp]	3.46	0.9501
					Potri.005G087400 [exp]	4.47	0.9423
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	5.19	0.9251	DREB47
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	5.91	0.9312
AT3G57450			unknown protein		Potri.006G050800 [exp]	6.48	0.9352
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.008G066000 [exp]	7.14	0.8794
AT1G23710			Protein of unknown function (D...		Potri.010G041300 [exp]	10.24	0.9157

Compare expression of checked genes

Potri.005G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.