Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02630 477 / 3e-166 Protein kinase superfamily protein (.1) AT1G01540 469 / 9e-164 Protein kinase superfamily protein (.1.2) AT4G01330 462 / 9e-161 Protein kinase superfamily protein (.1.2) AT4G34500 407 / 1e-139 Protein kinase superfamily protein (.1) AT3G59110 401 / 2e-136 Protein kinase superfamily protein (.1) AT1G56720 399 / 1e-135 Protein kinase superfamily protein (.1.2.3) AT2G42960 391 / 1e-132 Protein kinase superfamily protein (.1) AT1G09440 376 / 4e-127 Protein kinase superfamily protein (.1) AT3G17420 375 / 8e-127 GPK1 glyoxysomal protein kinase 1 (.1) AT5G18500 374 / 4e-126 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G026100 [exp] 533 / 0 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 474 / 4e-165 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 420 / 4e-144 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 418 / 3e-143 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 411 / 2e-140 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 410 / 4e-140 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G003300 [exp] 408 / 4e-139 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 405 / 7e-138 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 392 / 3e-133 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018722 [exp] 517 / 0 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 517 / 0 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024813 [exp] 503 / 5e-176 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10012664 [exp] 459 / 2e-161 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10007919 [exp] 458 / 4e-159 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036386 [exp] 452 / 8e-157 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001423 [exp] 402 / 1e-136 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 400 / 2e-134 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10042324 [exp] 409 / 3e-134 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10006215 [exp] 387 / 9e-132 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G139500.1 pacid=42804003 polypeptide=Potri.005G139500.1.p locus=Potri.005G139500 ID=Potri.005G139500.1.v4.1 annot-version=v4.1 ATGTCTGAGCACAAAACTAGTCTTATGTCAGACCAGTTATCGAAACCAACTTCAGTTTTTGGTTTAAGATTGTGGGTTGTTCTTGGTGTCTGTGTAGGGA CAACCATTGTGTTGCTACTTTTCTTTATCACTCTCTGGCTTGCTTCCAAGTCCAAAAAGAGTACAAACAATGAACCCAAAATCCCTATTGTATCTAAAAA GATTCAAGAAATCAGAATAGACCAATCCATTAAGCCTAATTGGGCACAAATGCAAACCCACCAATTTCAAGACCAGGAAATGATTACTAGAAAGGAAAGG GGAGATTTTTTGTTGCTTATACCACCAGAAGAGGAGAGTCCAGTGAAGTATCATGGGATTCAGATTGACATTGGTAAAGGGCATTTGATTTCTTATCTGG GTTCTTCTAGGGAAGCACCACGTGGCGGTGGCGGTGGCAATGGTGGTGGGTGGGGGCATTGGTATACTTTGAGAGAGCTTGAGGTAGCTACTAATTCTTT TGCTCATGAGAATGTTATTGGCGAGGGAGGGTATGGGATTGTTTACCATGGTGTTTTAGAGGATAATACTGAGATTGCTGGACAGGCTGAGAGAGAATTT AAAGTTGAAGTGGAAGACATTGGAAGAGTAAGGCACAAGAATTTAGTAAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCAAAGGATGCTCGTGTATGAAT ATGTGAATAGCGGGAACTTAGAACAATGGCTTCATGGTGATGTAGGGCCTTGCAGTCCTCTTACTTGGGAAATTAGAATGAAAATCATCTTGGGAACCGC GAAAGGATTAACTTACCTTCATGATGGACTTGAACCGAAAGTTATCCACCGTGACATAAAATCAAGCAACATTCTACTTGACAAGCAGTGGAACCCCAAA GTTTCAGACTTTGGCCTTGCCAAACTCCTTTTTTCAGGTAGCAGCTACATTACAACCCGTGTAATGGGAACATTTGGATATGTAGCTCTCGAGTATGCAA GTTCAGGCATGCTGAATGAAAGAAGTGATGTGTATAGTTTTGGGATTCTTATTATGGAAATTATCTCTGGAAGGAACCCAGTGGATTATAGCCGGCCTTC AGAAGAGGTGAACTTGATCGATTGGCTTAAGAGGATGGTTAGTAACAGGAATCCAGAGGGGGTATTGGATCCTAAACTACCTGAGAAACCTACTTTGAGG GCATTGAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTTGACCCGAGCGCACAGAAGCGACAAAAAATGAGCCATATTGTACACATGCTCGAAGCTGATA ACTCCCCCTTCAGAGAAGTATGTATTTGA
AA sequence Show only first row Show all	>Potri.005G139500.1 pacid=42804003 polypeptide=Potri.005G139500.1.p locus=Potri.005G139500 ID=Potri.005G139500.1.v4.1 annot-version=v4.1 MSEHKTSLMSDQLSKPTSVFGLRLWVVLGVCVGTTIVLLLFFITLWLASKSKKSTNNEPKIPIVSKKIQEIRIDQSIKPNWAQMQTHQFQDQEMITRKER GDFLLLIPPEEESPVKYHGIQIDIGKGHLISYLGSSREAPRGGGGGNGGGWGHWYTLRELEVATNSFAHENVIGEGGYGIVYHGVLEDNTEIAGQAEREF KVEVEDIGRVRHKNLVRLLGYCAEGAQRMLVYEYVNSGNLEQWLHGDVGPCSPLTWEIRMKIILGTAKGLTYLHDGLEPKVIHRDIKSSNILLDKQWNPK VSDFGLAKLLFSGSSYITTRVMGTFGYVALEYASSGMLNERSDVYSFGILIMEIISGRNPVDYSRPSEEVNLIDWLKRMVSNRNPEGVLDPKLPEKPTLR ALKRALLVALRCVDPSAQKRQKMSHIVHMLEADNSPFREVCI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	0	1
AT1G04650			unknown protein		Potri.003G175300 [exp]	1.00	0.9480
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	3.00	0.9334
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	3.46	0.9166
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	4.47	0.9236
AT1G16170			unknown protein		Potri.001G038750 [exp]	6.63	0.9263
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	7.34	0.8965
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	8.24	0.8981
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	8.48	0.9025
					Potri.001G207600 [exp]	9.59	0.8560
AT3G12180			Cornichon family protein (.1)		Potri.016G051000 [exp]	10.81	0.9018

Compare expression of checked genes

Potri.005G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.